Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G16250.2 | Thale cress | cytosol | 87.18 | 88.77 |
| CDX96822 | Canola | extracellular, vacuole | 87.69 | 79.17 |
| CDY33348 | Canola | cytosol | 32.31 | 70.0 |
| CDY35075 | Canola | cytosol | 31.79 | 67.39 |
| CDY17172 | Canola | cytosol | 23.08 | 62.5 |
| CDY35074 | Canola | cytosol | 33.08 | 61.72 |
| Solyc07g042950.1.1 | Tomato | cytosol | 27.18 | 59.55 |
| Solyc07g042960.1.1 | Tomato | cytosol, mitochondrion | 25.9 | 57.39 |
| GSMUA_Achr2P18470_001 | Banana | cytosol | 44.62 | 40.85 |
| CDX82306 | Canola | cytosol | 27.18 | 30.64 |
| CDY22982 | Canola | cytosol | 27.18 | 30.64 |
| CDY58259 | Canola | cytosol | 25.9 | 29.11 |
| CDY18573 | Canola | cytosol | 25.9 | 29.02 |
| CDX99248 | Canola | cytosol | 25.9 | 29.02 |
| CDY12647 | Canola | cytosol | 20.0 | 21.55 |
| CDY34765 | Canola | cytosol | 20.26 | 21.24 |
| CDY01812 | Canola | cytosol | 20.26 | 21.18 |
| CDX96091 | Canola | cytosol | 20.26 | 21.18 |
| CDY31534 | Canola | cytosol | 20.0 | 20.8 |
| CDX80156 | Canola | cytosol | 20.0 | 20.58 |
| CDX76807 | Canola | cytosol | 19.23 | 20.33 |
| CDY51562 | Canola | cytosol | 18.21 | 19.78 |
| CDY26117 | Canola | cytosol | 22.05 | 19.77 |
| CDY02451 | Canola | cytosol | 22.05 | 19.77 |
| CDY08233 | Canola | mitochondrion | 22.05 | 19.77 |
| CDY11811 | Canola | plastid | 17.44 | 19.71 |
| CDX90085 | Canola | plastid | 17.44 | 19.71 |
| CDY70128 | Canola | cytosol | 16.92 | 19.58 |
| CDY10574 | Canola | cytosol | 21.79 | 19.54 |
| CDY64883 | Canola | golgi, plastid | 20.51 | 19.46 |
| CDY36145 | Canola | cytosol | 17.44 | 19.43 |
| CDY16205 | Canola | nucleus | 21.03 | 19.39 |
| CDY66938 | Canola | cytosol, mitochondrion | 8.72 | 19.32 |
| CDY24045 | Canola | mitochondrion | 21.54 | 19.31 |
| CDY33062 | Canola | mitochondrion, plastid | 21.54 | 19.31 |
| CDY64382 | Canola | plastid | 16.92 | 19.3 |
| CDY03923 | Canola | cytosol | 16.67 | 19.23 |
| CDY58793 | Canola | cytosol | 17.69 | 19.22 |
| CDX96551 | Canola | cytosol | 20.0 | 19.21 |
| CDY00415 | Canola | mitochondrion | 10.51 | 19.16 |
| CDY01301 | Canola | cytosol | 7.69 | 19.11 |
| CDY52764 | Canola | cytosol | 20.77 | 19.06 |
| CDY62015 | Canola | nucleus | 20.26 | 19.04 |
| CDY46430 | Canola | cytosol | 20.77 | 19.01 |
| CDY15708 | Canola | cytosol | 16.67 | 18.95 |
| CDY66857 | Canola | cytosol | 17.18 | 18.82 |
| CDY01300 | Canola | cytosol | 10.77 | 18.75 |
| CDY33755 | Canola | cytosol | 5.9 | 18.7 |
| CDY54825 | Canola | cytosol | 9.23 | 18.65 |
| CDY49094 | Canola | nucleus | 20.26 | 18.63 |
| CDX81631 | Canola | nucleus | 19.49 | 18.58 |
| CDX73096 | Canola | cytosol | 18.97 | 18.45 |
| CDY70379 | Canola | cytosol | 7.44 | 18.35 |
| CDY53460 | Canola | cytosol | 8.21 | 18.18 |
| CDY60836 | Canola | cytosol | 17.44 | 17.89 |
| CDX82682 | Canola | cytosol | 14.36 | 17.89 |
| CDY26295 | Canola | mitochondrion, plastid | 18.21 | 17.84 |
| CDX99882 | Canola | mitochondrion, plastid | 18.21 | 17.84 |
| CDY52395 | Canola | cytosol | 19.74 | 17.78 |
| CDY13683 | Canola | cytosol | 19.74 | 17.78 |
| CDY34175 | Canola | cytosol | 18.72 | 17.76 |
| CDX68177 | Canola | cytosol | 18.97 | 17.75 |
| CDY62176 | Canola | nucleus | 20.26 | 17.67 |
| CDY09349 | Canola | nucleus | 20.0 | 17.57 |
| CDY28493 | Canola | cytosol | 18.46 | 17.52 |
| CDY04697 | Canola | cytosol | 10.0 | 17.49 |
| CDX85842 | Canola | cytosol | 18.97 | 17.33 |
| CDY52247 | Canola | cytosol | 14.1 | 17.19 |
| CDX90239 | Canola | cytosol | 17.44 | 17.13 |
| CDY30645 | Canola | nucleus | 9.74 | 17.04 |
| CDY45190 | Canola | nucleus | 19.74 | 17.0 |
| CDY03028 | Canola | cytosol | 19.49 | 16.93 |
| CDY65956 | Canola | cytosol | 7.95 | 16.49 |
| CDY17425 | Canola | cytosol | 16.92 | 16.46 |
| CDY15707 | Canola | cytosol, plastid | 14.87 | 16.43 |
| CDY33754 | Canola | nucleus | 10.51 | 16.4 |
| CDY69929 | Canola | cytosol | 17.44 | 16.31 |
| CDY63005 | Canola | cytosol | 17.18 | 16.07 |
| CDY36146 | Canola | cytosol | 16.92 | 15.83 |
| CDY49979 | Canola | cytosol | 16.41 | 15.69 |
| CDY64780 | Canola | cytosol | 16.92 | 15.21 |
| CDY12345 | Canola | cytosol | 17.44 | 14.95 |
| CDY49977 | Canola | cytosol | 15.38 | 12.77 |
| CDY03921 | Canola | cytosol, extracellular, plasma membrane | 10.51 | 11.61 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:2.120.10.80 | MapMan:35.1 | EnsemblPlants:CDX81755 | ProteinID:CDX81755 | ProteinID:CDX81755.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00136688001 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF41 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI0004EE9B38 |
Description
BnaC08g38460D
Coordinates
chrLK031826:+:628206..630683
Molecular Weight (calculated)
43990.2 Da
IEP (calculated)
6.349
GRAVY (calculated)
-0.273
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFFKLIISA EEQSIISGLP DDLSLRCIAK LSHGYHGALE CVSRGWRDLL RSPDYSRYKA KNGWSGTWLF VLTERSNNQW VAYDPEANRW HPLPRARAFQ
101: DGWHHSGFAC VCVSNFFLVL GGCYAPSVSS FPHQKPVVTR DVMRFDPFKK EWRLVAGMLT PRTHFACTAV SGKVYVAGGR NLTQSGGITS AEVYDPVADR
201: WEELPAMPRP QMDCSGLSYR GSFHVLSDQV GFAEQNSSEV FNPSEMSWST LEDIWPFSRA MQFAVQVMKN DRLYTIVDWG ESLIKTRDTD EGEWYNVGSV
301: PSVVLPDHPR ELEAFGYGFA ALRDELYVIG GKVLKWEESG VGRFDIVRLP VVRVCNPLDR PLNWRETKPM CFPAGGSITG CVSLEEHSPP
101: DGWHHSGFAC VCVSNFFLVL GGCYAPSVSS FPHQKPVVTR DVMRFDPFKK EWRLVAGMLT PRTHFACTAV SGKVYVAGGR NLTQSGGITS AEVYDPVADR
201: WEELPAMPRP QMDCSGLSYR GSFHVLSDQV GFAEQNSSEV FNPSEMSWST LEDIWPFSRA MQFAVQVMKN DRLYTIVDWG ESLIKTRDTD EGEWYNVGSV
301: PSVVLPDHPR ELEAFGYGFA ALRDELYVIG GKVLKWEESG VGRFDIVRLP VVRVCNPLDR PLNWRETKPM CFPAGGSITG CVSLEEHSPP
001: MESIEQSIIP GLPDDLALRC IAKLSHGYHG VLECVSRGWR DLVRGADYSC YKARNGWSGS WLFVLTERSK NQWVAYDPEA DRWHPLPRTR AVQDGWHHSG
101: FACVCVSNCL LVIGGCYAPS VSSFPHQKPV VTKDVMRFDP FKKQWKMVAS MRTPRTHFAC TSVSGKVYVA GGRNLTHSRG IPSAEVYDPV ADRWEELPAM
201: PRPQMDCSGL SYRGCFHVLS DQVGFAEQNS SEVFNPRDMT WSTVEDVWPF SRAMQFAVQV MKNDRVYTIV DWGESLIKTR DTDEGEWYNV GSVPSVVLPN
301: HPRELEAFGY GFAALRNELY VIGGKVLKWE ESGAGRFDIV RLPVVRVCNP LDRPLNWRET KPMCIPAGGS IIGCVSLEES SPP
101: FACVCVSNCL LVIGGCYAPS VSSFPHQKPV VTKDVMRFDP FKKQWKMVAS MRTPRTHFAC TSVSGKVYVA GGRNLTHSRG IPSAEVYDPV ADRWEELPAM
201: PRPQMDCSGL SYRGCFHVLS DQVGFAEQNS SEVFNPRDMT WSTVEDVWPF SRAMQFAVQV MKNDRVYTIV DWGESLIKTR DTDEGEWYNV GSVPSVVLPN
301: HPRELEAFGY GFAALRNELY VIGGKVLKWE ESGAGRFDIV RLPVVRVCNP LDRPLNWRET KPMCIPAGGS IIGCVSLEES SPP
Arabidopsis Description
F-box/kelch-repeat protein At1g16250 [Source:UniProtKB/Swiss-Prot;Acc:Q0WW40]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.