Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18573 | Canola | cytosol | 96.83 | 96.55 |
| Bra037535.1-P | Field mustard | cytosol | 95.97 | 95.97 |
| CDX82306 | Canola | cytosol | 86.17 | 86.42 |
| CDY22982 | Canola | cytosol | 85.88 | 86.13 |
| CDX99248 | Canola | cytosol | 84.73 | 84.48 |
| AT3G63220.2 | Thale cress | cytosol | 81.56 | 80.4 |
| VIT_07s0151g00770.t01 | Wine grape | cytosol | 69.45 | 69.86 |
| Solyc09g065400.1.1 | Tomato | cytosol | 68.59 | 68.99 |
| PGSC0003DMT400049746 | Potato | cytosol | 68.3 | 68.7 |
| KRH67237 | Soybean | cytosol | 66.57 | 66.96 |
| KRG95556 | Soybean | cytosol | 65.99 | 66.38 |
| KRH71403 | Soybean | cytosol | 65.71 | 66.28 |
| KRH32035 | Soybean | cytosol | 65.71 | 66.28 |
| Solyc06g008690.1.1 | Tomato | cytosol | 62.25 | 62.61 |
| PGSC0003DMT400013635 | Potato | cytosol | 61.96 | 62.32 |
| GSMUA_Achr6P24370_001 | Banana | cytosol | 56.48 | 56.48 |
| Os10t0388200-01 | Rice | cytosol | 55.62 | 55.62 |
| OQU82118 | Sorghum | cytosol | 55.62 | 55.46 |
| TraesCS6B01G243200.1 | Wheat | cytosol | 55.91 | 54.96 |
| TraesCS6D01G195800.1 | Wheat | cytosol | 55.91 | 54.96 |
| Zm00001d014338_P001 | Maize | cytosol | 55.04 | 54.89 |
| TraesCS7B01G234000.1 | Wheat | cytosol | 52.16 | 54.52 |
| TraesCS6A01G211500.1 | Wheat | extracellular, golgi | 44.38 | 50.0 |
| CDX81755 | Canola | cytosol | 29.11 | 25.9 |
| CDY33348 | Canola | cytosol | 12.68 | 24.44 |
| CDY35074 | Canola | cytosol | 14.7 | 24.4 |
| CDX96822 | Canola | extracellular, vacuole | 30.26 | 24.31 |
| CDX76807 | Canola | cytosol | 25.36 | 23.85 |
| CDY34765 | Canola | cytosol | 25.36 | 23.66 |
| CDY70379 | Canola | cytosol | 10.37 | 22.78 |
| CDY17172 | Canola | cytosol | 9.22 | 22.22 |
| CDY31534 | Canola | cytosol | 23.63 | 21.87 |
| CDY12647 | Canola | cytosol | 22.77 | 21.82 |
| CDX80156 | Canola | cytosol | 23.63 | 21.64 |
| CDY51562 | Canola | cytosol | 22.19 | 21.45 |
| CDY58793 | Canola | cytosol | 22.19 | 21.45 |
| CDY01301 | Canola | cytosol | 9.51 | 21.02 |
| CDX96091 | Canola | cytosol | 21.61 | 20.11 |
| CDY01812 | Canola | cytosol | 21.61 | 20.11 |
| CDY26295 | Canola | mitochondrion, plastid | 23.05 | 20.1 |
| CDX99882 | Canola | mitochondrion, plastid | 22.77 | 19.85 |
| CDY24045 | Canola | mitochondrion | 24.21 | 19.31 |
| CDY64382 | Canola | plastid | 19.02 | 19.3 |
| CDY64883 | Canola | golgi, plastid | 22.77 | 19.22 |
| CDY70128 | Canola | cytosol | 18.44 | 18.99 |
| CDY03923 | Canola | cytosol | 18.44 | 18.93 |
| CDY33062 | Canola | mitochondrion, plastid | 23.63 | 18.85 |
| CDY10574 | Canola | cytosol | 23.34 | 18.62 |
| CDX90085 | Canola | plastid | 18.44 | 18.55 |
| CDY35075 | Canola | cytosol | 9.8 | 18.48 |
| CDY02451 | Canola | cytosol | 23.05 | 18.39 |
| CDY15708 | Canola | cytosol | 18.16 | 18.37 |
| CDY36145 | Canola | cytosol | 18.44 | 18.29 |
| CDY11811 | Canola | plastid | 18.16 | 18.26 |
| CDX96551 | Canola | cytosol | 21.33 | 18.23 |
| CDY08233 | Canola | mitochondrion | 22.77 | 18.16 |
| CDY26117 | Canola | cytosol | 22.77 | 18.16 |
| CDY52247 | Canola | cytosol | 16.71 | 18.12 |
| CDX68177 | Canola | cytosol | 21.61 | 17.99 |
| CDY66857 | Canola | cytosol | 18.44 | 17.98 |
| CDX73096 | Canola | cytosol | 20.46 | 17.71 |
| CDY54825 | Canola | cytosol | 9.8 | 17.62 |
| CDY01300 | Canola | cytosol | 11.24 | 17.41 |
| CDX85842 | Canola | cytosol | 21.33 | 17.33 |
| CDY16205 | Canola | nucleus | 21.04 | 17.26 |
| CDX90239 | Canola | cytosol | 19.6 | 17.13 |
| CDY04697 | Canola | cytosol | 10.95 | 17.04 |
| CDY00415 | Canola | mitochondrion | 10.37 | 16.82 |
| CDY49979 | Canola | cytosol | 19.6 | 16.67 |
| CDY46430 | Canola | cytosol | 20.46 | 16.67 |
| CDY30645 | Canola | nucleus | 10.66 | 16.59 |
| CDY52764 | Canola | cytosol | 20.17 | 16.47 |
| CDY33754 | Canola | nucleus | 11.82 | 16.4 |
| CDY62015 | Canola | nucleus | 19.31 | 16.14 |
| CDY65956 | Canola | cytosol | 8.65 | 15.96 |
| CDX81631 | Canola | nucleus | 18.73 | 15.89 |
| CDY34175 | Canola | cytosol | 18.73 | 15.82 |
| CDY60836 | Canola | cytosol | 17.29 | 15.79 |
| CDX82682 | Canola | cytosol | 14.12 | 15.65 |
| CDY49094 | Canola | nucleus | 19.02 | 15.57 |
| CDY62176 | Canola | nucleus | 19.88 | 15.44 |
| CDY28493 | Canola | cytosol | 18.16 | 15.33 |
| CDY13683 | Canola | cytosol | 18.73 | 15.01 |
| CDY17425 | Canola | cytosol | 17.29 | 14.96 |
| HORVU6Hr1G007080.1 | Barley | cytosol | 3.75 | 14.94 |
| CDY09349 | Canola | nucleus | 19.02 | 14.86 |
| CDY15707 | Canola | cytosol, plastid | 14.99 | 14.73 |
| CDY03028 | Canola | cytosol | 19.02 | 14.7 |
| CDY52395 | Canola | cytosol | 18.16 | 14.55 |
| CDY45190 | Canola | nucleus | 18.73 | 14.35 |
| CDY64780 | Canola | cytosol | 17.87 | 14.29 |
| CDY69929 | Canola | cytosol | 17.0 | 14.15 |
| CDY63005 | Canola | cytosol | 17.0 | 14.15 |
| CDY36146 | Canola | cytosol | 17.0 | 14.15 |
| CDY12345 | Canola | cytosol | 18.16 | 13.85 |
| CDY49977 | Canola | cytosol | 17.29 | 12.77 |
| CDY66938 | Canola | cytosol, mitochondrion | 6.34 | 12.5 |
| CDY33755 | Canola | cytosol | 4.32 | 12.2 |
| CDY03921 | Canola | cytosol, extracellular, plasma membrane | 12.1 | 11.9 |
| CDY53460 | Canola | cytosol | 5.76 | 11.36 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | UniProt:A0A078J5L1 | EnsemblPlants:CDY58259 | ProteinID:CDY58259 | ProteinID:CDY58259.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00023321001 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF29 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 |
| UniParc:UPI0004EC28C0 | : | : | : | : | : |
Description
BnaC01g43820DBnaC01g43820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J5L1]
Coordinates
chrLK033650:-:45305..46348
Molecular Weight (calculated)
38327.4 Da
IEP (calculated)
6.919
GRAVY (calculated)
0.041
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSLLQGIP EAVALRCLAY VPLHHHPNLE LVSRSWRAAI RSRELFRVRN ELKSSENLLC VCSFDPENTW QVYSPTCDRW LTLPLLPSPI RHLAHFGAVT
101: TSGKLFVLGG GSDAVDPLTG DHDGTFATDE VWCYDFVERK WDQRASMLVP RSMFACCVLD GKIVVAGGFT TCRKSVSGAE MYDLESDAWS TIPHLNRTHN
201: SPCSGLVIRG RVHVLHKGLT TVQVLESVKL GWEVKEYGWP QGSMAVVEGV VYVLSHGVVY KQEEDETSWK MVASASEFKL RIGMAMTSLS GEVLLVGGVI
301: GPDRHWDIKP LSDVDVLTVG CDRPVWRKVA PMTKCCGTVL GCTQLII
101: TSGKLFVLGG GSDAVDPLTG DHDGTFATDE VWCYDFVERK WDQRASMLVP RSMFACCVLD GKIVVAGGFT TCRKSVSGAE MYDLESDAWS TIPHLNRTHN
201: SPCSGLVIRG RVHVLHKGLT TVQVLESVKL GWEVKEYGWP QGSMAVVEGV VYVLSHGVVY KQEEDETSWK MVASASEFKL RIGMAMTSLS GEVLLVGGVI
301: GPDRHWDIKP LSDVDVLTVG CDRPVWRKVA PMTKCCGTVL GCTQLII
001: MSGLLDGIPE AVALRCLAHV PLHLHPNLEL VSRSWRAAIR SHELFRVRKE LRSSEHLLCV CAFDPENIWQ VYSPNCDRWL TLPLLPSRIR HLAHFGAVTT
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI
Arabidopsis Description
SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.