CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030046.1-P	Field mustard	cytosol, plastid	100.0	100.0
CDY03923	Canola	cytosol	61.76	64.5
CDY64382	Canola	plastid	61.47	63.45
CDY15708	Canola	cytosol	61.19	62.97
CDY11811	Canola	plastid	54.39	55.65
AT1G27420.1	Thale cress	cytosol, plastid	54.11	55.2
CDX90085	Canola	plastid	53.26	54.49
CDY70128	Canola	cytosol	48.16	50.45
CDY66857	Canola	cytosol	49.58	49.16
CDY52247	Canola	cytosol	44.19	48.75
CDY36145	Canola	cytosol	47.31	47.71
CDY03921	Canola	cytosol, extracellular, plasma membrane	39.66	39.66
CDY54825	Canola	cytosol	21.53	39.38
CDY12647	Canola	cytosol	31.73	30.94
CDX96091	Canola	cytosol	31.16	29.49
CDY01812	Canola	cytosol	31.16	29.49
CDY64883	Canola	golgi, plastid	31.16	26.76
CDY35074	Canola	cytosol	11.9	20.1
CDY01301	Canola	cytosol	7.93	17.83
CDX99882	Canola	mitochondrion, plastid	19.55	17.34
CDY26295	Canola	mitochondrion, plastid	19.26	17.09
CDY33062	Canola	mitochondrion, plastid	20.96	17.01
CDY08233	Canola	mitochondrion	20.96	17.01
CDY24045	Canola	mitochondrion	20.96	17.01
CDY10574	Canola	cytosol	20.68	16.78
CDY26117	Canola	cytosol	20.68	16.78
CDY02451	Canola	cytosol	20.68	16.78
CDY17172	Canola	cytosol	6.8	16.67
CDX82306	Canola	cytosol	15.3	15.61
CDX99248	Canola	cytosol	15.3	15.52
CDY22982	Canola	cytosol	15.01	15.32
CDY58259	Canola	cytosol	14.73	14.99
CDY18573	Canola	cytosol	14.73	14.94
CDX81755	Canola	cytosol	16.43	14.87
CDY33754	Canola	nucleus	10.48	14.8
CDY31534	Canola	cytosol	15.3	14.4
CDX76807	Canola	cytosol	15.01	14.36
CDX96822	Canola	extracellular, vacuole	17.56	14.35
CDY04697	Canola	cytosol	9.07	14.35
CDY30645	Canola	nucleus	9.07	14.35
CDX80156	Canola	cytosol	15.3	14.25
CDY34765	Canola	cytosol	15.01	14.25
CDY51562	Canola	cytosol	14.16	13.93
CDY58793	Canola	cytosol	13.88	13.65
CDY33348	Canola	cytosol	6.8	13.33
CDY16205	Canola	nucleus	15.86	13.24
CDY52764	Canola	cytosol	15.86	13.18
CDY46430	Canola	cytosol	15.86	13.15
CDY34175	Canola	cytosol	15.01	12.9
CDY65956	Canola	cytosol	6.8	12.77
CDY70379	Canola	cytosol	5.67	12.66
CDY28493	Canola	cytosol	14.73	12.65
CDX82682	Canola	cytosol	11.05	12.46
CDY13683	Canola	cytosol	15.01	12.24
CDY52395	Canola	cytosol	14.73	12.01
CDY60836	Canola	cytosol	12.75	11.84
CDY62176	Canola	nucleus	14.73	11.63
CDY17425	Canola	cytosol	13.03	11.47
CDY62015	Canola	nucleus	13.31	11.33
CDY49094	Canola	nucleus	13.6	11.32
CDX68177	Canola	cytosol	13.31	11.27
CDY09349	Canola	nucleus	14.16	11.26
CDX81631	Canola	nucleus	13.03	11.25
CDY01300	Canola	cytosol	7.08	11.16
CDY03028	Canola	cytosol	14.16	11.14
CDY64780	Canola	cytosol	13.6	11.06
CDY45190	Canola	nucleus	14.16	11.04
CDX85842	Canola	cytosol	13.31	11.01
CDX96551	Canola	cytosol	12.46	10.84
CDY63005	Canola	cytosol	12.75	10.79
CDY69929	Canola	cytosol	12.75	10.79
CDY36146	Canola	cytosol	12.75	10.79
CDY00415	Canola	mitochondrion	6.52	10.75
CDX73096	Canola	cytosol	11.9	10.47
CDY49979	Canola	cytosol	11.9	10.29
CDX90239	Canola	cytosol	11.33	10.08
CDY12345	Canola	cytosol	12.75	9.89
CDY49977	Canola	cytosol	11.61	8.72
CDY35075	Canola	cytosol	3.97	7.61
CDY66938	Canola	cytosol, mitochondrion	3.68	7.39
CDY53460	Canola	cytosol	3.68	7.39
CDY33755	Canola	cytosol	1.98	5.69

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	GO:A0A078FS82	UniProt:A0A078FS82	EnsemblPlants:CDY15707	ProteinID:CDY15707
ProteinID:CDY15707.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00089930001	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
InterPro:Kelch_2	PFAM:PF01344	PFAM:PF07646	PANTHER:PTHR24412	PANTHER:PTHR24412:SF377	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	TMHMM:TMhelix	UniParc:UPI00025411AF	SEG:seg	:

Description

BnaA07g08780DBnaA07g08780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FS82]

Coordinates

chrLK032056:-:688867..690451

Molecular Weight (calculated)

40037.4 Da

IEP (calculated)

6.480

GRAVY (calculated)

0.098

Length

353 amino acids

Sequence
(BLAST)

001: MEESSTSIIP GLTDDVAALC LSRIPRSNFR VLSQVCRRWK TFLRSEHFAA VRKLTGTMEE FMCVFMKSIR GRKVYWEVFD SSGNNLGQIP PFPGPLKRGF
101: CVAVIGGEKI LFIGGYTGMK YWDFSRIPPI ASGDINEFSL STKSWRKLAD MNIPRYDFSL AEVDGLLYVV QGFSNDGYCL FNTEVYNPQT NQWSLMDGPV
201: AFPIGGFAFS FKSKLYAVVF DPEENSWTDE FLPTVEGGYR SGLGQWNNKV LLFSRLSVRE TLINGFDKEE GFKWRDCDQI KPSGSYLIVN TRSHQLLISF
301: SGSIILPIVC VCVWVTFWGC ESLCVWPQCP STLSMIFIWL VCNELLNLCV CVF

Best Arabidopsis Sequence Match ( AT1G27420.1 )
(BLAST)

001: MVVESSSSPI IPGLTDDVAE LCVSKIPRSS FQITSQVCRR WRSFLRSQHF AAVRKLTGTV EEFLCVLMES ECGRDVYWEV FDASGNKLGQ IPPVPGPLKR
101: GFGVAVLDGG KIVFFGGYTE VEGSGINSTT VSASADVYEF DPANNSWRKL AGMNIPRYNF AFAEVNGLLY VIRGYSTDTY SLSNAEVYNP KTNQWSLMHC
201: PNRPVWRGFA FAFSSKLYAV GNGSRFIDIY DPKTQTWEEL NSEQSVSVYS YTVVRNKVYF MDRNMPGRLG VFDPEENSWS SVFVPPREGG FWVRLGVWNN
301: KVLLFSRVCG HETLMYDLDK EKGSKWRVCD QIKPSASQLA SVLINF

Arabidopsis Description

Putative F-box/kelch-repeat protein At1g27420 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZJ3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.