Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66857 | Canola | cytosol | 94.96 | 89.89 |
| CDY36145 | Canola | cytosol | 77.15 | 74.29 |
| CDY11811 | Canola | plastid | 68.55 | 66.96 |
| CDX90085 | Canola | plastid | 68.55 | 66.96 |
| AT1G27420.1 | Thale cress | cytosol, plastid | 65.28 | 63.58 |
| CDY52247 | Canola | cytosol | 59.64 | 62.81 |
| CDY54825 | Canola | cytosol | 33.83 | 59.07 |
| CDY15708 | Canola | cytosol | 59.94 | 58.89 |
| CDY03923 | Canola | cytosol | 56.97 | 56.8 |
| CDY64382 | Canola | plastid | 56.68 | 55.85 |
| CDY15707 | Canola | cytosol, plastid | 50.45 | 48.16 |
| CDY03921 | Canola | cytosol, extracellular, plasma membrane | 36.5 | 34.84 |
| CDY01812 | Canola | cytosol | 35.61 | 32.17 |
| CDY12647 | Canola | cytosol | 34.42 | 32.04 |
| CDX96091 | Canola | cytosol | 35.01 | 31.64 |
| CDY64883 | Canola | golgi, plastid | 34.12 | 27.98 |
| CDY35074 | Canola | cytosol | 13.06 | 21.05 |
| CDY01301 | Canola | cytosol | 8.9 | 19.11 |
| CDY08233 | Canola | mitochondrion | 24.63 | 19.08 |
| CDY26117 | Canola | cytosol | 24.33 | 18.85 |
| CDY24045 | Canola | mitochondrion | 24.04 | 18.62 |
| CDY02451 | Canola | cytosol | 24.04 | 18.62 |
| CDY10574 | Canola | cytosol | 24.04 | 18.62 |
| CDX99882 | Canola | mitochondrion, plastid | 21.96 | 18.59 |
| CDY26295 | Canola | mitochondrion, plastid | 21.96 | 18.59 |
| CDY58259 | Canola | cytosol | 18.99 | 18.44 |
| CDY33062 | Canola | mitochondrion, plastid | 23.74 | 18.39 |
| CDY18573 | Canola | cytosol | 18.99 | 18.39 |
| CDX99248 | Canola | cytosol | 18.99 | 18.39 |
| CDX82306 | Canola | cytosol | 18.69 | 18.21 |
| CDY51562 | Canola | cytosol | 19.29 | 18.11 |
| CDY22982 | Canola | cytosol | 18.4 | 17.92 |
| CDY58793 | Canola | cytosol | 18.69 | 17.55 |
| CDY31534 | Canola | cytosol | 18.99 | 17.07 |
| CDX81755 | Canola | cytosol | 19.58 | 16.92 |
| CDX80156 | Canola | cytosol | 18.99 | 16.89 |
| CDY33754 | Canola | nucleus | 12.46 | 16.8 |
| CDX76807 | Canola | cytosol | 17.8 | 16.26 |
| CDY34765 | Canola | cytosol | 17.51 | 15.86 |
| CDY16205 | Canola | nucleus | 19.88 | 15.84 |
| CDY70379 | Canola | cytosol | 7.42 | 15.82 |
| CDY34175 | Canola | cytosol | 19.29 | 15.82 |
| CDY46430 | Canola | cytosol | 19.88 | 15.73 |
| CDY28493 | Canola | cytosol | 18.99 | 15.57 |
| CDY52764 | Canola | cytosol | 19.58 | 15.53 |
| CDY60836 | Canola | cytosol | 17.51 | 15.53 |
| CDX96822 | Canola | extracellular, vacuole | 19.88 | 15.51 |
| CDY62176 | Canola | nucleus | 20.47 | 15.44 |
| CDY30645 | Canola | nucleus | 10.09 | 15.25 |
| CDY04697 | Canola | cytosol | 10.09 | 15.25 |
| CDY17425 | Canola | cytosol | 18.1 | 15.21 |
| CDY09349 | Canola | nucleus | 19.88 | 15.09 |
| CDY33348 | Canola | cytosol | 8.01 | 15.0 |
| CDY03028 | Canola | cytosol | 19.88 | 14.92 |
| CDY65956 | Canola | cytosol | 8.31 | 14.89 |
| CDY13683 | Canola | cytosol | 18.99 | 14.78 |
| CDY62015 | Canola | nucleus | 18.1 | 14.7 |
| CDY49094 | Canola | nucleus | 18.4 | 14.62 |
| CDY45190 | Canola | nucleus | 19.58 | 14.57 |
| CDX81631 | Canola | nucleus | 17.51 | 14.43 |
| CDX68177 | Canola | cytosol | 17.8 | 14.39 |
| CDX85842 | Canola | cytosol | 17.8 | 14.05 |
| CDX96551 | Canola | cytosol | 16.91 | 14.04 |
| CDX73096 | Canola | cytosol | 16.32 | 13.72 |
| CDY52395 | Canola | cytosol | 17.51 | 13.63 |
| CDX82682 | Canola | cytosol | 12.46 | 13.42 |
| CDY01300 | Canola | cytosol | 8.9 | 13.39 |
| CDY17172 | Canola | cytosol | 5.64 | 13.19 |
| CDX90239 | Canola | cytosol | 15.13 | 12.85 |
| CDY49979 | Canola | cytosol | 15.13 | 12.5 |
| CDY63005 | Canola | cytosol | 15.13 | 12.23 |
| CDY64780 | Canola | cytosol | 15.73 | 12.21 |
| CDY00415 | Canola | mitochondrion | 7.72 | 12.15 |
| CDY36146 | Canola | cytosol | 14.84 | 11.99 |
| CDY69929 | Canola | cytosol | 14.84 | 11.99 |
| CDY12345 | Canola | cytosol | 15.43 | 11.43 |
| CDY33755 | Canola | cytosol | 4.15 | 11.38 |
| CDY53460 | Canola | cytosol | 5.34 | 10.23 |
| CDY49977 | Canola | cytosol | 13.95 | 10.0 |
| CDY66938 | Canola | cytosol, mitochondrion | 5.04 | 9.66 |
| CDY35075 | Canola | cytosol | 4.75 | 8.7 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | UniProt:A0A078JRB7 | EnsemblPlants:CDY70128 | ProteinID:CDY70128 | ProteinID:CDY70128.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00096569001 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 |
| PANTHER:PTHR24412 | PANTHER:PTHR24412:SF377 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 |
| UniParc:UPI0004EE93EF | : | : | : | : | : |
Description
BnaCnng66850DBnaCnng66850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRB7]
Coordinates
chrLK041250:-:1894..3128
Molecular Weight (calculated)
37991.7 Da
IEP (calculated)
4.917
GRAVY (calculated)
-0.326
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MVESSPSSLI PGLTDDVAEL CLSRIPRYDF RIISQVCRRW RRFLKSKHFS AVRKLTGPVE EFMCVLMKSQ SPEDGSMWVE YLYGEVFDAS GNNLGQIPSV
101: PAPLKSQFGV EVLGGEKIVL VGGYAEAEGF PIDGTTRISA SADVYEFDPA SNSWRKLAGM NVPRREFAFA VVDGLLYVIR GFSSDGECLQ SSEVYNPETN
201: QWSFMDECPD RPDFHRAFAF SFKTETWEEL DSGQSLSVYS YTVVRNKVYF FDHNSDYKKP ELGVFDPEEN SWSSVSVPRS PGAYWCKVGE WNNKVILVSP
301: LGGRTLIRDL DKENASKWRD THIKPSGSNP TIVLINF
101: PAPLKSQFGV EVLGGEKIVL VGGYAEAEGF PIDGTTRISA SADVYEFDPA SNSWRKLAGM NVPRREFAFA VVDGLLYVIR GFSSDGECLQ SSEVYNPETN
201: QWSFMDECPD RPDFHRAFAF SFKTETWEEL DSGQSLSVYS YTVVRNKVYF FDHNSDYKKP ELGVFDPEEN SWSSVSVPRS PGAYWCKVGE WNNKVILVSP
301: LGGRTLIRDL DKENASKWRD THIKPSGSNP TIVLINF
001: MVVESSSSPI IPGLTDDVAE LCVSKIPRSS FQITSQVCRR WRSFLRSQHF AAVRKLTGTV EEFLCVLMES ECGRDVYWEV FDASGNKLGQ IPPVPGPLKR
101: GFGVAVLDGG KIVFFGGYTE VEGSGINSTT VSASADVYEF DPANNSWRKL AGMNIPRYNF AFAEVNGLLY VIRGYSTDTY SLSNAEVYNP KTNQWSLMHC
201: PNRPVWRGFA FAFSSKLYAV GNGSRFIDIY DPKTQTWEEL NSEQSVSVYS YTVVRNKVYF MDRNMPGRLG VFDPEENSWS SVFVPPREGG FWVRLGVWNN
301: KVLLFSRVCG HETLMYDLDK EKGSKWRVCD QIKPSASQLA SVLINF
101: GFGVAVLDGG KIVFFGGYTE VEGSGINSTT VSASADVYEF DPANNSWRKL AGMNIPRYNF AFAEVNGLLY VIRGYSTDTY SLSNAEVYNP KTNQWSLMHC
201: PNRPVWRGFA FAFSSKLYAV GNGSRFIDIY DPKTQTWEEL NSEQSVSVYS YTVVRNKVYF MDRNMPGRLG VFDPEENSWS SVFVPPREGG FWVRLGVWNN
301: KVLLFSRVCG HETLMYDLDK EKGSKWRVCD QIKPSASQLA SVLINF
Arabidopsis Description
Putative F-box/kelch-repeat protein At1g27420 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZJ3]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.