Factsheet for AT1G27420.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11811	Canola	plastid	87.28	87.54
CDX90085	Canola	plastid	86.13	86.38
Bra010942.1-P	Field mustard	plastid	85.84	86.09
CDY15708	Canola	cytosol	69.94	70.55
CDY66857	Canola	cytosol	68.5	66.57
CDY36145	Canola	cytosol	67.05	66.29
CDY52247	Canola	cytosol	61.27	66.25
CDY03923	Canola	cytosol	64.45	65.98
CDY70128	Canola	cytosol	63.58	65.28
CDY64382	Canola	plastid	64.16	64.91
CDY54825	Canola	cytosol	35.26	63.21
CDY15707	Canola	cytosol, plastid	55.2	54.11
Bra030046.1-P	Field mustard	cytosol, plastid	55.2	54.11
Bra030045.1-P	Field mustard	cytosol	66.19	48.62
CDY03921	Canola	cytosol, extracellular, plasma membrane	44.22	43.34
AT1G67480.1	Thale cress	cytosol, mitochondrion	39.6	36.44
AT1G30090.1	Thale cress	mitochondrion, plastid	23.41	20.35
AT1G55270.1	Thale cress	mitochondrion	23.7	18.89
AT1G16250.2	Thale cress	cytosol	19.65	17.75
AT1G22040.1	Thale cress	plastid	23.99	17.47
AT5G60570.2	Thale cress	cytosol	19.65	17.3
AT3G63220.2	Thale cress	cytosol	17.34	17.05
AT3G61350.2	Thale cress	cytosol	17.05	16.48
AT2G24540.1	Thale cress	cytosol	17.05	15.86
AT1G26930.1	Thale cress	cytosol	19.08	15.68
AT3G27150.1	Thale cress	cytosol	19.08	15.64
AT5G40680.1	Thale cress	mitochondrion	16.76	13.98
AT2G02870.1	Thale cress	nucleus	18.79	13.92
AT1G74510.2	Thale cress	cytosol	17.92	13.75
AT1G14330.1	Thale cress	nucleus	16.47	12.93

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:839632	ProteinID:AAF99736.1	ProteinID:AEE30827.1	ArrayExpress:AT1G27420
EnsemblPlantsGene:AT1G27420	RefSeq:AT1G27420	TAIR:AT1G27420	RefSeq:AT1G27420-TAIR-G	EnsemblPlants:AT1G27420.1	TAIR:AT1G27420.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	RefSeq:NP_174062.1	PFAM:PF00646	PFAM:PF01344
PO:PO:0000293	PANTHER:PTHR24412	PANTHER:PTHR24412:SF377	UniProt:Q9FZJ3	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI0000162EE3	:	:	:	:

Description

Putative F-box/kelch-repeat protein At1g27420 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZJ3]

Coordinates

chr1:+:9519067..9520716

Molecular Weight (calculated)

38944.2 Da

IEP (calculated)

7.718

GRAVY (calculated)

-0.195

Length

346 amino acids

Sequence
(BLAST)

001: MVVESSSSPI IPGLTDDVAE LCVSKIPRSS FQITSQVCRR WRSFLRSQHF AAVRKLTGTV EEFLCVLMES ECGRDVYWEV FDASGNKLGQ IPPVPGPLKR
101: GFGVAVLDGG KIVFFGGYTE VEGSGINSTT VSASADVYEF DPANNSWRKL AGMNIPRYNF AFAEVNGLLY VIRGYSTDTY SLSNAEVYNP KTNQWSLMHC
201: PNRPVWRGFA FAFSSKLYAV GNGSRFIDIY DPKTQTWEEL NSEQSVSVYS YTVVRNKVYF MDRNMPGRLG VFDPEENSWS SVFVPPREGG FWVRLGVWNN
301: KVLLFSRVCG HETLMYDLDK EKGSKWRVCD QIKPSASQLA SVLINF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.