Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007843.1-P | Field mustard | cytosol | 80.91 | 80.91 |
| CDX76807 | Canola | cytosol | 80.11 | 80.76 |
| CDY34765 | Canola | cytosol | 80.38 | 80.38 |
| VIT_04s0008g02380.t01 | Wine grape | cytosol, peroxisome, plastid | 53.23 | 53.51 |
| GSMUA_AchrUn_... | Banana | cytosol | 42.47 | 44.26 |
| KRH61941 | Soybean | plastid | 41.13 | 43.59 |
| KRH52601 | Soybean | extracellular, golgi | 45.16 | 42.11 |
| Zm00001d046921_P001 | Maize | cytosol | 37.9 | 35.79 |
| Os06t0655500-01 | Rice | cytosol | 36.56 | 35.42 |
| EER90147 | Sorghum | cytosol | 37.1 | 35.11 |
| TraesCS7D01G483900.1 | Wheat | cytosol | 35.75 | 34.73 |
| Zm00001d046922_P001 | Maize | cytosol | 35.75 | 34.55 |
| TraesCS7A01G496600.1 | Wheat | cytosol | 35.48 | 34.29 |
| TraesCS5A01G544300.1 | Wheat | extracellular, plasma membrane | 26.08 | 33.92 |
| AT1G30090.1 | Thale cress | mitochondrion, plastid | 35.48 | 33.17 |
| AT3G63220.2 | Thale cress | cytosol | 23.39 | 24.72 |
| AT3G61350.2 | Thale cress | cytosol | 21.24 | 22.07 |
| AT1G22040.1 | Thale cress | plastid | 25.27 | 19.79 |
| AT1G67480.1 | Thale cress | cytosol, mitochondrion | 19.89 | 19.68 |
| AT1G16250.2 | Thale cress | cytosol | 18.82 | 18.28 |
| AT1G55270.1 | Thale cress | mitochondrion | 20.7 | 17.74 |
| AT1G27420.1 | Thale cress | cytosol, plastid | 15.86 | 17.05 |
| AT5G60570.2 | Thale cress | cytosol | 17.47 | 16.54 |
| AT1G26930.1 | Thale cress | cytosol | 17.74 | 15.68 |
| AT1G14330.1 | Thale cress | nucleus | 16.94 | 14.29 |
| AT1G74510.2 | Thale cress | cytosol | 15.86 | 13.08 |
| AT2G02870.1 | Thale cress | nucleus | 15.86 | 12.63 |
| AT3G27150.1 | Thale cress | cytosol | 14.25 | 12.56 |
| AT5G40680.1 | Thale cress | mitochondrion | 13.98 | 12.53 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:816990 | ProteinID:AAD23891.1 | ProteinID:AEC07590.1 | Symbol:AFR |
| ArrayExpress:AT2G24540 | EnsemblPlantsGene:AT2G24540 | RefSeq:AT2G24540 | TAIR:AT2G24540 | RefSeq:AT2G24540-TAIR-G | EnsemblPlants:AT2G24540.1 |
| TAIR:AT2G24540.1 | EMBL:AY072009 | EMBL:AY087570 | EMBL:BT000847 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009987 |
| GO:GO:0010017 | GO:GO:0016567 | GO:GO:0019538 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller |
| InterPro:Kelch_1 | RefSeq:NP_565572.1 | PFAM:PF00646 | PFAM:PF01344 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009006 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF31 | UniProt:Q8LAW2 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 |
| SUPFAM:SSF81383 | UniParc:UPI00000ABF5D | : | : | : | : |
Description
AFRF-box protein AFR [Source:UniProtKB/Swiss-Prot;Acc:Q8LAW2]
Coordinates
chr2:+:10426342..10427683
Molecular Weight (calculated)
41280.0 Da
IEP (calculated)
6.155
GRAVY (calculated)
-0.233
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQETTSNI NTINDQAEEE TRTKSQPLIS GLPNDIAELC LLRLPYPYHA LYRSVSSSWN KTITNPRFLF SKQSLSISSP YLFVFAFNKS TARIQWQSLD
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.