Factsheet for Zm00001d046921_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005003_P002
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d028948_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24540.1	Zm00001d005003_P002	AT2G41090.1	17360592
AT2G24540.1	Zm00001d008278_P001	AT2G41090.1	17360592
AT2G24540.1	Zm00001d010649_P001	AT2G41090.1	17360592
AT2G24540.1	Zm00001d028948_P001	AT2G41090.1	17360592
AT2G24540.1	Zm00001d038543_P004	AT2G41090.1	17360592
AT2G24540.1	Zm00001d038545_P001	AT2G41090.1	17360592
AT2G24540.1	Zm00001d041430_P001	AT2G41090.1	17360592
AT2G24540.1	Zm00001d043144_P001	AT2G41090.1	17360592
AT2G24540.1	Zm00001d047597_P001	AT2G41090.1	17360592
AT2G24540.1	Zm00001d052415_P001	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90147	Sorghum	cytosol	91.88	92.11
Zm00001d046922_P001	Maize	cytosol	89.59	91.69
TraesCS5A01G544300.1	Wheat	extracellular, plasma membrane	63.71	87.76
Os06t0655500-01	Rice	cytosol	84.01	86.2
TraesCS7A01G496600.1	Wheat	cytosol	81.47	83.38
TraesCS7D01G483900.1	Wheat	cytosol	80.46	82.77
GSMUA_AchrUn_...	Banana	cytosol	45.69	50.42
VIT_04s0008g02380.t01	Wine grape	cytosol, peroxisome, plastid	40.1	42.7
CDX76807	Canola	cytosol	36.8	39.3
Bra007843.1-P	Field mustard	cytosol	37.06	39.25
CDY34765	Canola	cytosol	37.06	39.25
AT2G24540.1	Thale cress	cytosol	35.79	37.9
KRH61941	Soybean	plastid	33.76	37.89
KRH52601	Soybean	extracellular, golgi	38.32	37.84
Zm00001d018813_P001	Maize	mitochondrion	36.55	35.12
Zm00001d015744_P001	Maize	plastid	27.66	26.08
Zm00001d014338_P001	Maize	cytosol	19.8	22.41
Zm00001d049632_P001	Maize	cytosol	25.63	21.09
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	24.37	21.05
Zm00001d016553_P001	Maize	cytosol	19.04	20.6
Zm00001d032991_P001	Maize	cytosol	22.08	19.91
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	21.57	19.36
Zm00001d014986_P001	Maize	cytosol	17.77	19.28
Zm00001d027856_P001	Maize	cytosol	16.5	15.15
Zm00001d048310_P001	Maize	cytosol	15.99	14.72
Zm00001d007596_P001	Maize	nucleus, plastid	16.24	14.51
Zm00001d048898_P001	Maize	cytosol	15.99	14.48
Zm00001d026321_P001	Maize	cytosol	15.99	14.06
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	15.48	13.77
Zm00001d052253_P001	Maize	cytosol	14.72	13.71
Zm00001d033012_P001	Maize	cytosol	14.97	13.23
Zm00001d002284_P003	Maize	mitochondrion	14.97	12.09
Zm00001d007538_P001	Maize	cytosol	8.63	11.45
Zm00001d019862_P001	Maize	cytosol	14.47	8.33

Protein Annotations

EntrezGene:100274552	Gene3D:2.120.10.80	MapMan:35.1	ProteinID:AQL05188.1	UniProt:B4G1W7	EMBL:BT043355
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PANTHER:PTHR24414	PANTHER:PTHR24414:SF31
SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00017B7B53	EnsemblPlantsGene:Zm00001d046921	EnsemblPlants:Zm00001d046921_P001
EnsemblPlants:Zm00001d046921_T001	SEG:seg	:	:	:	:

Description

F-box protein AFR

Coordinates

chr9:+:110797888..110799072

Molecular Weight (calculated)

41820.4 Da

IEP (calculated)

4.645

GRAVY (calculated)

-0.028

Length

394 amino acids

Sequence
(BLAST)

001: MSFSSMSKQQ VLDAGDGEGE EVVELIPGLP EEVAEKCLLH LPFLYHRLFR TVSSTWNRFL TDSPAKPLLF TPAEGAGAGA GSAAMGSLSL SLPFLFAFAF
101: DPVSRRLQCQ ALDPFSRRWL LLPPVPGGAA AGSFAVVGLP RRGEIYVIGG VEEGSDKAVT SVAVYSAARN GWEEAAAMRT PRGYMAAGEV GGRVVVAGED
201: GEAEVFDPDA GRWSPAAPRR GAAVAWYDAA AAGGKLYVTE GWAWPFERAP RGAVYDSATD SWCEMARGMR EGWTGSCAVA GGRMYIVAEY GEWRLKQYDE
301: ARDEWRMVAG SGVPPEVRRP HVVAGEIGEV AGGRRRIYVV GAGLDVAVGT VSASDTAAAP GVHGVEEEVV EWEVVKGPTE FVGLAPCNAQ VLYA

Best Arabidopsis Sequence Match ( AT2G24540.1 )
(BLAST)

001: MAEQETTSNI NTINDQAEEE TRTKSQPLIS GLPNDIAELC LLRLPYPYHA LYRSVSSSWN KTITNPRFLF SKQSLSISSP YLFVFAFNKS TARIQWQSLD
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV

Arabidopsis Description

AFRF-box protein AFR [Source:UniProtKB/Swiss-Prot;Acc:Q8LAW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.