Factsheet for Zm00001d033012_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91835	Sorghum	cytosol, nucleus, plastid	93.5	93.92
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	92.38	93.0
Zm00001d048310_P001	Maize	cytosol	71.52	74.53
Zm00001d027856_P001	Maize	cytosol	70.18	72.96
CDY33755	Canola	cytosol	17.49	63.41
GSMUA_Achr1P21630_001	Banana	cytosol	51.35	60.74
Zm00001d052253_P001	Maize	cytosol	57.4	60.52
GSMUA_Achr8P01380_001	Banana	cytosol	50.9	59.74
VIT_17s0000g05920.t01	Wine grape	cytosol	55.16	55.53
Bra026838.1-P	Field mustard	nucleus	50.67	55.53
CDX81631	Canola	nucleus	50.67	55.26
GSMUA_Achr8P17960_001	Banana	nucleus	51.35	55.05
CDY62015	Canola	nucleus	51.12	54.94
Solyc04g005870.1.1	Tomato	cytosol	6.5	54.72
KRH63378	Soybean	cytosol	53.81	54.42
Solyc04g005670.1.1	Tomato	cytosol	49.1	54.21
CDY49094	Canola	nucleus	51.35	54.01
KRH54527	Soybean	cytosol	53.36	53.97
Solyc03g113010.1.1	Tomato	cytosol	52.91	53.51
PGSC0003DMT400007346	Potato	nucleus	51.79	53.35
GSMUA_Achr10P...	Banana	nucleus	51.35	52.64
AT1G14330.1	Thale cress	nucleus	51.79	52.38
CDY60836	Canola	cytosol	44.62	52.37
Bra026575.1-P	Field mustard	nucleus	51.35	51.58
Zm00001d048898_P001	Maize	cytosol	50.22	51.49
KRH03453	Soybean	cytosol	47.09	51.47
CDY09349	Canola	nucleus	51.12	51.35
PGSC0003DMT400046591	Potato	extracellular	52.47	51.32
Bra017407.1-P	Field mustard	nucleus, plastid	50.45	51.25
CDY62176	Canola	nucleus	51.35	51.23
GSMUA_Achr2P14920_001	Banana	mitochondrion	54.26	50.63
CDY17425	Canola	cytosol	45.29	50.37
Bra024801.1-P	Field mustard	nucleus	51.12	50.33
CDY45190	Canola	nucleus	51.12	50.33
CDY03028	Canola	cytosol	50.45	50.11
AT1G26930.1	Thale cress	cytosol	46.86	49.64
CDY46430	Canola	cytosol	47.31	49.53
AT2G02870.1	Thale cress	nucleus	51.79	49.46
CDY16205	Canola	nucleus	46.86	49.41
KRH56929	Soybean	cytosol	45.07	49.39
Bra016297.1-P	Field mustard	cytosol	47.09	49.3
Zm00001d007596_P001	Maize	nucleus, plastid	48.65	49.21
CDY52764	Canola	cytosol	46.86	49.18
PGSC0003DMT400059324	Potato	cytosol	51.12	47.5
CDY33754	Canola	nucleus	26.46	47.2
GSMUA_Achr4P24130_001	Banana	nucleus	52.91	45.65
GSMUA_Achr3P01570_001	Banana	golgi	50.0	45.6
KRH45883	Soybean	cytosol	54.04	44.71
KRH70694	Soybean	cytosol	53.36	44.16
KRH74828	Soybean	cytosol	53.14	44.13
KRG99114	Soybean	cytosol	52.91	43.78
VIT_01s0026g02080.t01	Wine grape	nucleus	52.69	43.44
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	15.25	43.04
Zm00001d026321_P001	Maize	cytosol	40.81	40.62
Zm00001d002284_P003	Maize	mitochondrion	42.6	38.93
PGSC0003DMT400007391	Potato	cytosol	11.21	37.31
Zm00001d007538_P001	Maize	cytosol	22.65	34.01
Solyc05g007220.2.1	Tomato	nucleus	49.1	34.01
Zm00001d019862_P001	Maize	cytosol	39.91	26.02
Zm00001d032991_P001	Maize	cytosol	21.75	22.2
Zm00001d014338_P001	Maize	cytosol	16.82	21.55
Zm00001d016553_P001	Maize	cytosol	16.82	20.6
Zm00001d015744_P001	Maize	plastid	18.83	20.1
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	19.51	19.82
Zm00001d018813_P001	Maize	mitochondrion	17.94	19.51
Zm00001d014986_P001	Maize	cytosol	15.47	19.01
Zm00001d049632_P001	Maize	cytosol	20.4	19.0
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	19.28	18.86
Zm00001d046922_P001	Maize	cytosol	13.0	15.06
Zm00001d046921_P001	Maize	cytosol	13.23	14.97

Protein Annotations

EMBL:BT033486	EMBL:BT083705	EnsemblPlants:Zm00001d033012_P001	EnsemblPlants:Zm00001d033012_T001	EnsemblPlantsGene:Zm00001d033012	EntrezGene:100191405
Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF133	PFAM:PF01344	ProteinID:ONM06603.1	SEG:seg
SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI00017B604D	UniProt:B4F8P8	MapMan:35.1	:

Description

F-box/kelch-repeat protein SKIP11

Coordinates

chr1:+:246988429..246989769

Molecular Weight (calculated)

49225.5 Da

IEP (calculated)

6.608

GRAVY (calculated)

-0.371

Length

446 amino acids

Sequence
(BLAST)

001: MDLYDEGEEM ALQDGDSCLA PRASRGGCEV DLQWADGLLE GADRKRRARE GFKDEVHFVQ EMDEVDGSGK RSKPPSPQPH TPDIREAHAP GRRRTVVAGG
101: GELSCGGGDL IGQIGRDLSI NCLLRLCRSE YGSVASLNHD FRSLVRGGEI YRLRRQNNIA EHWVYFSCNV LEWDAYDPYR KRWISVPKMP PDECFMCSDK
201: ESLAVGTELL VFGMAHIVFR YSILTNSWTR GEVMNSPRCL FGSASVGEKA YVAGGTDSFG RILSSAELYN SETHTWTPLP SMNKARKNCS GVFIDGKFCV
301: IGGVTNNNMI LTCGEVYDVQ SKTWRVIENM SGGLNGVSGA PPLVAVVKNE LYAADYSGKD VKKYDKQNNG WITLGKLPER SVSMNGWGLA FRACGERLIV
401: IGGPRTPVGG MIELTSWTPD DKPPVWNLMD RRPSGNFVYN CAVMGC

Best Arabidopsis Sequence Match ( AT1G14330.1 )
(BLAST)

001: MVEDRTYLMS RIFSSSRLSE SKWPYMYPQP EDSSESNLIN GKRALENDVD ELRQSKSPRL MGFSIHGNEA IEEDEQEQDQ SDSNNNGNSD GDSLINDIGR
101: DNSISCLIRC SRSGYGSIAS LNRSFRSLVK TGEIYRLRRQ NQIVEHWVYF SCQLLEWVAF NPFERRWMNL PTMPSGVTFM CADKESLAVG TDLLVLGKDD
201: YSSHVIYRYS LLTNSWSSGM RMNSPRCLFG SASLGEIAIF AGGFDSFGKI SDSAEMYNSE LQTWTTLPKM NKPRKMCSGV FMDGKFYVIG GIGGNDSKVL
301: TCGEEFDLET KKWTEIPEMS PPRSREMPAA AEAPPLVAVV NNELYAADHA DMEVRKYDKE SKKWFTLGRL PERADSVNGW GLAFRACGER LIVIGGPRSS
401: GGGYIELNSW IPSSDRSPPL WTLLGRKHSS NFVYNCAVMG C

Arabidopsis Description

At1g14330/F14L17_7 [Source:UniProtKB/TrEMBL;Acc:Q9M9S9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.