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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:
  • plastid 2
  • mitochondrion 3
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7D01G005100.1 Wheat cytosol 40.51 29.77
HORVU2Hr1G057150.1 Barley cytosol 34.18 29.03
HORVU2Hr1G057140.1 Barley cytosol 34.18 29.03
TraesCS4A01G487800.1 Wheat cytosol 41.77 25.58
TraesCS4A01G493800.1 Wheat cytosol 40.51 25.5
CDY60836 Canola cytosol 50.0 20.79
CDY17425 Canola cytosol 50.0 19.7
PGSC0003DMT400007346 Potato nucleus 53.16 19.4
TraesCS4D01G286700.1 Wheat cytosol 39.87 19.09
Bra017407.1-P Field mustard nucleus, plastid 50.0 18.0
Bra026838.1-P Field mustard nucleus 46.2 17.94
TraesCS7A01G004600.1 Wheat cytosol 41.14 17.86
AT1G14330.1 Thale cress nucleus 49.37 17.69
CDX81631 Canola nucleus 45.57 17.6
AT1G26930.1 Thale cress cytosol 46.84 17.58
Bra026575.1-P Field mustard nucleus 49.37 17.57
AT2G02870.1 Thale cress nucleus 51.9 17.56
CDY62015 Canola nucleus 45.57 17.35
CDY09349 Canola nucleus 48.73 17.34
CDY62176 Canola nucleus 48.73 17.23
TraesCS6A01G306000.1 Wheat cytosol 46.2 17.18
HORVU6Hr1G075590.1 Barley cytosol, nucleus, plastid 46.2 17.18
TraesCS6B01G334300.1 Wheat cytosol, nucleus, plastid 46.2 17.18
TraesCS6D01G285100.1 Wheat cytosol, nucleus, plastid 46.2 17.18
CDY52764 Canola cytosol 46.2 17.18
CDY46430 Canola cytosol 46.2 17.14
Bra016297.1-P Field mustard cytosol 46.2 17.14
PGSC0003DMT400059324 Potato cytosol 51.9 17.08
CDY49094 Canola nucleus 45.57 16.98
CDY03028 Canola cytosol 48.1 16.93
TraesCS4A01G492300.1 Wheat cytosol, golgi, plastid 41.14 16.88
CDY45190 Canola nucleus 48.1 16.78
Bra024801.1-P Field mustard nucleus 48.1 16.78
TraesCS4A01G489600.1 Wheat cytosol 39.87 16.67
Os02t0748300-01 Rice cytosol 44.94 16.67
Zm00001d052253_P001 Maize cytosol 44.3 16.55
TraesCS4A01G489300.1 Wheat cytosol 39.87 16.54
PGSC0003DMT400046591 Potato extracellular 47.47 16.45
TraesCS7D01G007100.1 Wheat cytosol 38.61 16.4
Zm00001d048310_P001 Maize cytosol 44.3 16.36
GSMUA_Achr4P09990_001 Banana cytosol 44.3 16.32
KXG40080 Sorghum cytosol 43.67 16.12
CDY16205 Canola nucleus 43.04 16.08
KXG30756 Sorghum cytosol 43.04 16.0
PGSC0003DMT400020936 Potato cytosol 38.61 15.72
VIT_01s0026g02080.t01 Wine grape nucleus 53.8 15.71
Zm00001d027856_P001 Maize cytosol 42.41 15.62
Zm00001d014203_P001 Maize cytosol, nucleus, plastid 43.67 15.58
OQU91835 Sorghum cytosol, nucleus, plastid 43.67 15.54
Os11t0602800-01 Rice nucleus 42.41 15.51
KRH74828 Soybean cytosol 51.9 15.27
Zm00001d033012_P001 Maize cytosol 43.04 15.25
KRH45883 Soybean cytosol 51.9 15.21
KRG99114 Soybean cytosol 51.9 15.21
HORVU7Hr1G000010.5 Barley cytosol 41.77 15.07
KRH70694 Soybean cytosol 51.27 15.03
Zm00001d048898_P001 Maize cytosol 40.51 14.71
TraesCS4A01G016200.1 Wheat cytosol 39.87 14.62
Os03t0171600-01 Rice cytosol 39.87 14.62
OQU83795 Sorghum cytosol 41.14 14.57
Zm00001d007596_P001 Maize nucleus, plastid 40.51 14.51
HORVU4Hr1G075310.1 Barley cytosol 39.87 14.35
GSMUA_Achr1P21630_001 Banana cytosol 33.54 14.06
GSMUA_Achr8P01380_001 Banana cytosol 32.28 13.42
CDY33754 Canola nucleus 20.25 12.8
TraesCS4A01G491100.1 Wheat cytosol 42.41 12.74
TraesCS4A01G493200.1 Wheat cytosol, plasma membrane 37.97 12.66
GSMUA_Achr4P00520_001 Banana cytosol 30.38 12.34
GSMUA_Achr8P17960_001 Banana nucleus 32.28 12.26
GSMUA_Achr10P... Banana nucleus 33.54 12.18
GSMUA_Achr7P20970_001 Banana cytosol 29.75 11.9
HORVU7Hr1G000070.1 Barley cytosol 39.24 11.81
PGSC0003DMT400021985 Potato nucleus 29.11 11.03
GSMUA_Achr2P14920_001 Banana mitochondrion 32.91 10.88
GSMUA_Achr3P01570_001 Banana golgi 32.91 10.63
CDY33755 Canola cytosol 8.23 10.57
PGSC0003DMT400007391 Potato cytosol 8.86 10.45
GSMUA_Achr4P24130_001 Banana nucleus 34.18 10.44
PGSC0003DMT400013635 Potato cytosol 17.72 8.12
PGSC0003DMT400049746 Potato cytosol 17.09 7.83
PGSC0003DMT400034149 Potato cytosol 20.89 7.55
PGSC0003DMT400081852 Potato cytosol 19.62 7.09
PGSC0003DMT400032733 Potato cytosol, plastid 20.89 6.95
PGSC0003DMT400008228 Potato cytosol, mitochondrion, peroxisome, plastid 16.46 6.47
PGSC0003DMT400000478 Potato nucleus 14.56 5.76
Protein Annotations
EnsemblPlants:PGSC0003DMT400091785EnsemblPlantsGene:PGSC0003DMG400041356Gene3D:2.120.10.80GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR015915InterPro:Kelch-typ_b-propellerInterPro:Kelch_1PANTHER:PTHR24413PANTHER:PTHR24413:SF138PFAM:PF01344
PGSC:PGSC0003DMG400041356SUPFAM:SSF117281UniParc:UPI000296B9ECUniProt:M1DNE1MapMan:35.1:
Description
Kelch repeat-containing F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400041356]
Coordinates
chr2:-:12562730..12563206
Molecular Weight (calculated)
17682.4 Da
IEP (calculated)
7.467
GRAVY (calculated)
-0.132
Length
158 amino acids
Sequence
(BLAST)
001: MRMNAPRCLF GSASLGEISI LASGCDSRGN ILSSAELYNS EAGTWKSLLS MNKPHKKCSG VFMNGMFNVI RGIEGAKSEW LTCEEEYDLE TRAWTQIQRM
101: SPNAYKNDTH ATYGEPHLVA VISSMCIIPI CIRRHVLDFQ SIFSFPDHIP PHKLTTLI
Best Arabidopsis Sequence Match ( AT2G02870.1 )
(BLAST)
001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
Arabidopsis Description
SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.