Factsheet for PGSC0003DMT400008228

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid, peroxisome, mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g021600.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	98.01	98.01
KRH21075	Soybean	mitochondrion	73.13	72.59
KRH11179	Soybean	mitochondrion, plastid	72.64	72.1
VIT_10s0003g03730.t01	Wine grape	cytosol	40.05	70.0
AT1G30090.1	Thale cress	mitochondrion, plastid	65.17	65.83
CDX99882	Canola	mitochondrion, plastid	64.68	65.33
Bra032358.1-P	Field mustard	mitochondrion, plastid	64.43	65.08
CDY26295	Canola	mitochondrion, plastid	64.43	65.08
GSMUA_Achr6P31190_001	Banana	mitochondrion	64.18	62.77
Os07t0153400-01	Rice	mitochondrion	62.19	61.58
Zm00001d018813_P001	Maize	mitochondrion	61.94	60.73
TraesCS2A01G499700.1	Wheat	cytosol, mitochondrion	59.7	60.3
TraesCS2D01G499800.1	Wheat	mitochondrion	60.7	60.25
EER97991	Sorghum	mitochondrion	60.7	58.94
PGSC0003DMT400034149	Potato	cytosol	28.11	25.86
PGSC0003DMT400081852	Potato	cytosol	27.86	25.63
PGSC0003DMT400049746	Potato	cytosol	20.15	23.48
PGSC0003DMT400013635	Potato	cytosol	19.4	22.61
PGSC0003DMT400032733	Potato	cytosol, plastid	26.37	22.32
PGSC0003DMT400020936	Potato	cytosol	19.9	20.62
PGSC0003DMT400000478	Potato	nucleus	20.15	20.3
PGSC0003DMT400021985	Potato	nucleus	17.66	17.03
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	6.47	16.46
PGSC0003DMT400007346	Potato	nucleus	17.41	16.17
PGSC0003DMT400046591	Potato	extracellular	17.66	15.57
PGSC0003DMT400059324	Potato	cytosol	18.41	15.42
PGSC0003DMT400007391	Potato	cytosol	4.23	12.69

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102605680	Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	UniProt:M0ZUA3	PFAM:PF00646	PFAM:PF01344	EnsemblPlantsGene:PGSC0003DMG400003174	PGSC:PGSC0003DMG400003174
EnsemblPlants:PGSC0003DMT400008228	PFscan:PS50181	PANTHER:PTHR24411	PANTHER:PTHR24411:SF27	SMART:SM00256	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00029527DE	RefSeq:XP_006359093.1	:	:

Description

Protein AFR [Source:PGSC_GENE;Acc:PGSC0003DMG400003174]

Coordinates

chr2:+:12109437..12111893

Molecular Weight (calculated)

45387.7 Da

IEP (calculated)

7.953

GRAVY (calculated)

-0.113

Length

402 amino acids

Sequence
(BLAST)

001: MQRVRVSSHQ APVQRLGDSQ MTLSPKFRLA AKQSDLLDPS FDLEMWRKGE PLIPGLPDDV ALNCLLRIPV DDHMNCRVVC KRWYSLFATK DRFFSRRKEL
101: GFHDPWLFVF AFHKTSGKIQ WKVFDLKNSS WHTIPAMPCK EKVCPHGFRC ICFPHDGVLY VCGGVASDVD CPLNLVVKYE VRRNRWTVMK KMITARSFFA
201: SGVIDGMIYV AGGNSTHLFE LDSAEVLDPN KGIWCPVASM GTNMASYDSA VLNGKLLVTE GWFWPFYVVP RGQIYDPQTG NWENMASGLR EGWTGSSVVL
301: YGQLFVVSEH ERTKLKVYDP ETDSWDTVEG LPLPEQICKP FSVDCCDNRI VVVGRNLHVA VGHIKSLQPS SKRCSFAVYW QVVDAPASLS DFTPSSAQVL
401: FA

Best Arabidopsis Sequence Match ( AT1G30090.1 )
(BLAST)

001: MQRVRVSSQR AVVHKLGDSQ MTLSPKFRVA ASIQSTLFDR SSELELSLRG EPLIPGLPDD VALNCLLRVP VQSHVSSKSV CKRWHLLFGT KETFFAKRKE
101: FGFKDPWLFV VGFSRCTGKI QWKVLDLRNL TWHEIPAMPC RDKVCPHGFR SVSMPREGTM FVCGGMVSDS DCPLDLVLKY DMVKNHWTVT NKMITARSFF
201: ASGVIDGMIY AAGGNAADLY ELDCAEVLNP LDGNWRPVSN MVAHMASYDT AVLNGKLLVT EGWLWPFFVS PRGQVYDPRT DQWETMSMGL REGWTGTSVV
301: IYDRLFIVSE LERMKMKVYD PVTDSWETIN GPELPEQICR PFAVNCYGNR VYVVGRNLHL AVGNIWQSEN KFAVRWEVVE SPERYADITP SNSQILFA

Arabidopsis Description

F-box/kelch-repeat protein At1g30090 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z0]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.