Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g069320.1.1 | Tomato | plastid | 54.38 | 96.79 |
| VIT_06s0004g02980.t01 | Wine grape | cytosol | 74.48 | 79.4 |
| KRH26429 | Soybean | cytosol | 68.56 | 73.08 |
| KRH22905 | Soybean | cytosol | 69.85 | 69.67 |
| KRH24879 | Soybean | cytosol | 68.81 | 67.25 |
| KRH29930 | Soybean | cytosol | 60.05 | 67.15 |
| Bra002471.1-P | Field mustard | cytosol | 64.69 | 66.93 |
| CDY31534 | Canola | cytosol | 64.69 | 66.93 |
| CDX80156 | Canola | cytosol | 64.69 | 66.23 |
| AT5G60570.2 | Thale cress | cytosol | 66.49 | 65.65 |
| KXG27134 | Sorghum | cytosol | 43.81 | 63.2 |
| KRH12864 | Soybean | cytosol, plasma membrane | 51.8 | 61.85 |
| GSMUA_Achr3P23350_001 | Banana | cytosol, extracellular | 55.41 | 53.35 |
| GSMUA_Achr9P30470_001 | Banana | cytosol | 51.55 | 51.15 |
| TraesCS2D01G463000.1 | Wheat | cytosol | 57.99 | 50.34 |
| TraesCS2A01G462600.1 | Wheat | cytosol | 57.73 | 49.89 |
| Zm00001d026321_P001 | Maize | cytosol | 57.47 | 49.78 |
| TraesCS2B01G484200.1 | Wheat | cytosol | 57.47 | 49.67 |
| HORVU2Hr1G103880.2 | Barley | cytosol | 56.44 | 49.1 |
| Os04t0619300-01 | Rice | cytosol, extracellular | 58.51 | 47.69 |
| OQU82347 | Sorghum | mitochondrion | 57.47 | 47.25 |
| Zm00001d002284_P003 | Maize | mitochondrion | 58.25 | 46.31 |
| GSMUA_Achr11P... | Banana | cytosol | 52.06 | 45.91 |
| PGSC0003DMT400007346 | Potato | nucleus | 47.94 | 42.96 |
| Zm00001d007538_P001 | Maize | cytosol | 31.96 | 41.75 |
| PGSC0003DMT400046591 | Potato | extracellular | 47.16 | 40.13 |
| PGSC0003DMT400091785 | Potato | cytosol, mitochondrion, plastid | 15.72 | 38.61 |
| PGSC0003DMT400059324 | Potato | cytosol | 47.16 | 38.12 |
| PGSC0003DMT400007391 | Potato | cytosol | 11.6 | 33.58 |
| PGSC0003DMT400021985 | Potato | nucleus | 35.05 | 32.61 |
| Zm00001d019862_P001 | Maize | cytosol | 56.44 | 32.02 |
| PGSC0003DMT400049746 | Potato | cytosol | 18.56 | 20.87 |
| PGSC0003DMT400081852 | Potato | cytosol | 23.2 | 20.59 |
| PGSC0003DMT400034149 | Potato | cytosol | 22.94 | 20.37 |
| PGSC0003DMT400013635 | Potato | cytosol | 18.04 | 20.29 |
| PGSC0003DMT400008228 | Potato | cytosol, mitochondrion, peroxisome, plastid | 20.62 | 19.9 |
| PGSC0003DMT400000478 | Potato | nucleus | 18.04 | 17.54 |
| PGSC0003DMT400032733 | Potato | cytosol, plastid | 21.39 | 17.47 |
Protein Annotations
| EntrezGene:102605810 | Gene3D:2.120.10.80 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller |
| InterPro:Kelch_1 | UniProt:M1AEB6 | PFAM:PF01344 | EnsemblPlantsGene:PGSC0003DMG400008107 | PGSC:PGSC0003DMG400008107 | EnsemblPlants:PGSC0003DMT400020936 |
| PANTHER:PTHR24413 | PANTHER:PTHR24413:SF169 | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI0002951AE0 | RefSeq:XP_006340156.1 |
| SEG:seg | : | : | : | : | : |
Description
Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400008107]
Coordinates
chr11:+:41233608..41236076
Molecular Weight (calculated)
43819.4 Da
IEP (calculated)
7.283
GRAVY (calculated)
-0.369
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MASETKKLKN EYLFGKEEEE KGKRMRLEEE DDDGHCKFRS SDSLLPGLHD DVALTCLARA SRSDYASLSC LNARFNSLVK SGYLYDLRRR IGVVEHWVYM
101: VCDPRGWEAF DPFGKKWLRL PKIPCDDCFN YADKESLAVG SELLVFGREL FDFAIWKYSL IQNNWEKCEG MNHRRCLFGS GSLGSISIVA GGSDKNGNVL
201: KSAELYDSLT GRWEILPNMH SPRRLCSGFF MDEKFYVLGG MTNPTDSLTC GEEFDLQTRK WRKIECMYPN VNRAAQAPPL VAVVNNQLYA VEYLTNMVKK
301: YDKKKNSWEV LGRLPVRADS SNGWGLAFKA FGEELLVIGG NRGPEGEAII LSSWAPKSGC KDGTLDWKVI GLKEHSGVFV YNCAVMGC
101: VCDPRGWEAF DPFGKKWLRL PKIPCDDCFN YADKESLAVG SELLVFGREL FDFAIWKYSL IQNNWEKCEG MNHRRCLFGS GSLGSISIVA GGSDKNGNVL
201: KSAELYDSLT GRWEILPNMH SPRRLCSGFF MDEKFYVLGG MTNPTDSLTC GEEFDLQTRK WRKIECMYPN VNRAAQAPPL VAVVNNQLYA VEYLTNMVKK
301: YDKKKNSWEV LGRLPVRADS SNGWGLAFKA FGEELLVIGG NRGPEGEAII LSSWAPKSGC KDGTLDWKVI GLKEHSGVFV YNCAVMGC
001: MAAEEHSNKR REVSASASAS ASASVVVNLR VGEEDNDGHR LRLGSSDSVL PGLIDDVALN CLAWVPRSDY PSLSCVNKKY NKLINSGHLF ALRKELGIVE
101: YLVFMVCDPR GWLMFSPMKK KWMVLPKMPC DECFNHADKE SLAVDDELLV FGRELFQFAI WKYSLRSRCW VKCEGMHRPR CLFASGSLGG IAIVAGGTDM
201: NGNILASAEL YDSSSGRWEM LPNMHSPRRL CSGFFMDGKF YVIGGMSSPN VSVTFGEEFD LETRKWRKIE GMYPNVNRAA QAPPLVVVVN NELFTLEYST
301: NMVKKYDKVK NKWEVMGRLP PMVDSSNGWG LAFKPCGDQL LVFCGQRGPH GEGIVVNSWC PKSGAKDGNL DWKVLGVKEN VGVFVYNCAV MGC
101: YLVFMVCDPR GWLMFSPMKK KWMVLPKMPC DECFNHADKE SLAVDDELLV FGRELFQFAI WKYSLRSRCW VKCEGMHRPR CLFASGSLGG IAIVAGGTDM
201: NGNILASAEL YDSSSGRWEM LPNMHSPRRL CSGFFMDGKF YVIGGMSSPN VSVTFGEEFD LETRKWRKIE GMYPNVNRAA QAPPLVVVVN NELFTLEYST
301: NMVKKYDKVK NKWEVMGRLP PMVDSSNGWG LAFKPCGDQL LVFCGQRGPH GEGIVVNSWC PKSGAKDGNL DWKVLGVKEN VGVFVYNCAV MGC
Arabidopsis Description
F-box/kelch-repeat protein At5g60570 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKJ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.