Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g094520.2.1 | Tomato | nucleus | 96.24 | 96.24 |
| VIT_15s0046g02710.t01 | Wine grape | cytosol | 58.15 | 64.62 |
| VIT_15s0046g02790.t01 | Wine grape | cytosol | 41.1 | 59.42 |
| KRH48153 | Soybean | cytosol | 51.88 | 57.18 |
| KRH48156 | Soybean | cytosol | 47.87 | 52.76 |
| KRH48154 | Soybean | cytosol | 48.62 | 52.72 |
| KRH65052 | Soybean | cytosol | 40.85 | 50.94 |
| AT3G61350.2 | Thale cress | cytosol | 45.11 | 50.28 |
| KRH65051 | Soybean | cytosol | 41.1 | 50.0 |
| CDY58793 | Canola | cytosol | 42.61 | 47.35 |
| Bra003447.1-P | Field mustard | cytosol | 42.61 | 47.35 |
| CDY51562 | Canola | cytosol | 42.36 | 47.08 |
| HORVU6Hr1G007030.1 | Barley | cytosol | 39.6 | 45.66 |
| EES06149 | Sorghum | cytosol | 39.35 | 45.38 |
| GSMUA_Achr4P20790_001 | Banana | extracellular | 42.11 | 44.56 |
| TraesCS6A01G037900.1 | Wheat | cytosol | 39.85 | 43.8 |
| Zm00001d014986_P001 | Maize | cytosol | 38.6 | 42.42 |
| Os02t0114600-02 | Rice | cytosol | 37.84 | 41.94 |
| TraesCS6D01G043400.1 | Wheat | cytosol | 39.6 | 41.36 |
| TraesCS6B01G052900.2 | Wheat | cytosol | 39.35 | 41.1 |
| PGSC0003DMT400049746 | Potato | cytosol | 21.8 | 25.22 |
| PGSC0003DMT400013635 | Potato | cytosol | 21.05 | 24.35 |
| PGSC0003DMT400081852 | Potato | cytosol | 25.06 | 22.88 |
| PGSC0003DMT400034149 | Potato | cytosol | 23.56 | 21.51 |
| PGSC0003DMT400008228 | Potato | cytosol, mitochondrion, peroxisome, plastid | 20.3 | 20.15 |
| PGSC0003DMT400032733 | Potato | cytosol, plastid | 22.81 | 19.16 |
| PGSC0003DMT400020936 | Potato | cytosol | 17.54 | 18.04 |
| PGSC0003DMT400007346 | Potato | nucleus | 18.8 | 17.32 |
| PGSC0003DMT400059324 | Potato | cytosol | 19.55 | 16.25 |
| PGSC0003DMT400046591 | Potato | extracellular | 18.3 | 16.01 |
| PGSC0003DMT400021985 | Potato | nucleus | 15.29 | 14.63 |
| PGSC0003DMT400091785 | Potato | cytosol, mitochondrion, plastid | 5.76 | 14.56 |
| PGSC0003DMT400007391 | Potato | cytosol | 4.76 | 14.18 |
Protein Annotations
| EntrezGene:102591056 | Gene3D:2.120.10.80 | MapMan:35.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009409 | GO:GO:0009628 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | UniProt:M0ZGT1 | PFAM:PF00646 |
| PFAM:PF01344 | EnsemblPlantsGene:PGSC0003DMG400000165 | PGSC:PGSC0003DMG400000165 | EnsemblPlants:PGSC0003DMT400000478 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF40 |
| SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI000294E1D1 | RefSeq:XP_006339558.1 | SEG:seg |
Description
Protein AFR [Source:PGSC_GENE;Acc:PGSC0003DMG400000165]
Coordinates
chr1:-:72056268..72059559
Molecular Weight (calculated)
44272.5 Da
IEP (calculated)
5.157
GRAVY (calculated)
-0.239
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSCKAAPSN PQGAGTNTEQ VYSESENFVV TENSLDNDQS VDVEDSGSGD NSELDPEASR LIPGLPDDIA LFCLARVPRR HHVLLKCVSR KWRDLVSGEE
101: WYSYRKKHDL QESWIYALGR DKSEQLCCYV LDPTRLKRGW KPILGLPHRC IRRKGVGFEV LGKKLFLFGG CGWIEDATNE VYCYDAAMNK WNQATSLVVP
201: RCYSVSEVLD EKIYAIGGIG PNSNNLPSWE TYNTETTSWT LHENPNIFPD IEDSIVLGGK IYIRGGSSPL SSLVSAFVYE RSSNTWQPAA SELVSGWYGP
301: AVVVDGTLYV LDQSSGTRLM MWQKDIREWV AVGRLSPLLT KPPCRLVAVG NNIFIIGKGL STVVFNVENA RNMDGVLVST SIPKSISDDD VISCKAITI
101: WYSYRKKHDL QESWIYALGR DKSEQLCCYV LDPTRLKRGW KPILGLPHRC IRRKGVGFEV LGKKLFLFGG CGWIEDATNE VYCYDAAMNK WNQATSLVVP
201: RCYSVSEVLD EKIYAIGGIG PNSNNLPSWE TYNTETTSWT LHENPNIFPD IEDSIVLGGK IYIRGGSSPL SSLVSAFVYE RSSNTWQPAA SELVSGWYGP
301: AVVVDGTLYV LDQSSGTRLM MWQKDIREWV AVGRLSPLLT KPPCRLVAVG NNIFIIGKGL STVVFNVENA RNMDGVLVST SIPKSISDDD VISCKAITI
001: MACIVEDPQR AGQSNETQIA LISGVPDDIS KSCLARVPRE YHMAMKCVSR RWRDFVCSDE MCDYRNEFNL AESWIYALCR DISGGVFLHM LNPFSSRRSW
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI
Arabidopsis Description
SKIP4F-box/kelch-repeat protein SKIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.