Factsheet for GSMUA_Achr4P20790_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G007030.1	Barley	cytosol	53.05	57.8
EES06149	Sorghum	cytosol	51.72	56.36
TraesCS6A01G037900.1	Wheat	cytosol	53.32	55.37
Os02t0114600-02	Rice	cytosol	52.52	55.0
Zm00001d014986_P001	Maize	cytosol	52.79	54.82
TraesCS6D01G043400.1	Wheat	cytosol	54.38	53.66
TraesCS6B01G052900.2	Wheat	cytosol	53.58	52.88
VIT_15s0046g02710.t01	Wine grape	cytosol	46.42	48.75
VIT_15s0046g02790.t01	Wine grape	cytosol	33.95	46.38
KRH48153	Soybean	cytosol	41.91	43.65
Solyc01g094520.2.1	Tomato	nucleus	44.83	42.36
PGSC0003DMT400000478	Potato	nucleus	44.56	42.11
KRH48156	Soybean	cytosol	38.46	40.06
KRH48154	Soybean	cytosol	38.99	39.95
KRH65052	Soybean	cytosol	33.69	39.69
AT3G61350.2	Thale cress	cytosol	36.6	38.55
CDY58793	Canola	cytosol	36.34	38.16
KRH65051	Soybean	cytosol	33.16	38.11
Bra003447.1-P	Field mustard	cytosol	36.07	37.88
CDY51562	Canola	cytosol	36.07	37.88
GSMUA_Achr6P24370_001	Banana	cytosol	20.16	21.9
GSMUA_Achr7P08330_001	Banana	cytosol	21.49	20.56
GSMUA_Achr3P29560_001	Banana	cytosol	21.75	19.95
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	21.49	19.85
GSMUA_Achr6P04050_001	Banana	cytosol	23.87	19.78
GSMUA_AchrUn_...	Banana	cytosol	18.3	19.33
GSMUA_Achr7P27010_001	Banana	cytosol	21.22	19.23
GSMUA_Achr8P01380_001	Banana	cytosol	19.1	18.95
GSMUA_Achr2P22090_001	Banana	cytosol	18.57	18.57
GSMUA_Achr6P31190_001	Banana	mitochondrion	19.89	18.25
GSMUA_Achr8P28270_001	Banana	cytosol	18.3	17.97
GSMUA_Achr6P20750_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	18.57	17.95
GSMUA_Achr1P21630_001	Banana	cytosol	17.77	17.77
GSMUA_Achr10P...	Banana	cytosol	23.87	17.31
GSMUA_Achr3P16120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	17.51	17.28
GSMUA_Achr7P20970_001	Banana	cytosol	17.24	16.46
GSMUA_Achr2P18470_001	Banana	cytosol	18.57	16.43
GSMUA_Achr4P09990_001	Banana	cytosol	18.57	16.32
GSMUA_Achr8P17960_001	Banana	nucleus	17.77	16.11
GSMUA_Achr3P23350_001	Banana	cytosol, extracellular	16.98	15.88
GSMUA_Achr4P00520_001	Banana	cytosol	16.18	15.68
GSMUA_Achr10P...	Banana	nucleus	17.51	15.17
GSMUA_Achr3P01570_001	Banana	golgi	19.36	14.93
GSMUA_Achr9P30470_001	Banana	cytosol	14.85	14.32
GSMUA_Achr11P...	Banana	cytosol	16.18	13.86
GSMUA_Achr4P24130_001	Banana	nucleus	18.83	13.73
GSMUA_Achr2P14920_001	Banana	mitochondrion	17.24	13.6
GSMUA_Achr4P03630_001	Banana	plasma membrane	20.95	9.31

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006950	GO:GO:0008150	GO:GO:0009409	GO:GO:0009628	EnsemblPlantsGene:GSMUA_Achr4G20790_001
EnsemblPlants:GSMUA_Achr4P20790_001	EnsemblPlants:GSMUA_Achr4T20790_001	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
UniProt:M0SQP2	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF40	SMART:SM00256
SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002948B8A	:	:

Description

Putative F-box/kelch-repeat protein SKIP4 [Source:GMGC_GENE;Acc:GSMUA_Achr4G20790_001]

Coordinates

chr4:-:21323525..21325046

Molecular Weight (calculated)

42559.0 Da

IEP (calculated)

6.612

GRAVY (calculated)

-0.107

Length

377 amino acids

Sequence
(BLAST)

001: MVYVEKLTLI IYWSCTVDIT MAFGQNATDN CLQEGSHVAL INGLPDEISI LCLARVPRRY HHILRCVSRK WRALLCSEEW HYHRQKNNME ETWIYVMCRA
101: NLKGNLCYVL DPDPANRSWK LIQPIPSPCL KKDGMSVEAL GKKLYLLGGC TWQEDATDEV YCYDASANKW DVASSMPTAR CFFVSASLDD KLYISSGLGL
201: RSTAPNSWDI YHSDSDSWIS HKNPLHNHDV IKLIALEGKL CTIHKSWDGF SYAGIYDPAS ATWQGIDNEI ALSTYGPTVV VDGVLYMLHE SSGMRLLKWQ
301: EERKEWVAIG RLSSHLTRPP CHLVAIGRSI YVIGQRLSTV VIDVDEAAKV EGLMVSSSFS PRFECDHTVI SCNTITI

Best Arabidopsis Sequence Match ( AT3G61350.1 )
(BLAST)

001: MACIVEDPQR AGQSNETQIA LISGVPDDIS KSCLARVPRE YHMAMKCVSR RWRDFVCSDE MCDYRNEFNL AESWIYALCR DISGGVFLHM LNPFSSRRSW
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI

Arabidopsis Description

SKIP4F-box/kelch-repeat protein SKIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.