Factsheet for GSMUA_Achr1P21630_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P17960_001	Banana	nucleus	81.17	73.56
GSMUA_Achr8P01380_001	Banana	cytosol	70.29	69.74
TraesCS4D01G286700.1	Wheat	cytosol	57.82	66.06
GSMUA_Achr10P...	Banana	nucleus	72.94	63.22
CDY33755	Canola	cytosol	20.16	61.79
TraesCS4A01G493800.1	Wheat	cytosol	39.79	59.76
GSMUA_Achr2P14920_001	Banana	mitochondrion	75.07	59.2
GSMUA_Achr7P20970_001	Banana	cytosol	61.54	58.73
Solyc04g005870.1.1	Tomato	cytosol	8.22	58.49
GSMUA_Achr4P00520_001	Banana	cytosol	59.95	58.1
Os03t0171600-01	Rice	cytosol	62.6	54.76
TraesCS7A01G004600.1	Wheat	cytosol	52.79	54.67
GSMUA_Achr4P24130_001	Banana	nucleus	74.8	54.55
GSMUA_Achr4P09990_001	Banana	cytosol	62.07	54.55
KXG40080	Sorghum	cytosol	61.8	54.44
Zm00001d027856_P001	Maize	cytosol	61.54	54.08
TraesCS4A01G016200.1	Wheat	cytosol	61.8	54.06
Zm00001d048310_P001	Maize	cytosol	61.27	53.97
GSMUA_Achr3P01570_001	Banana	golgi	69.5	53.58
TraesCS7D01G007100.1	Wheat	cytosol	52.52	53.23
HORVU4Hr1G075310.1	Barley	cytosol	61.54	52.85
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	61.8	52.6
OQU91835	Sorghum	cytosol, nucleus, plastid	61.27	52.03
TraesCS7D01G005100.1	Wheat	cytosol	29.44	51.63
Zm00001d033012_P001	Maize	cytosol	60.74	51.35
VIT_17s0000g05920.t01	Wine grape	cytosol	59.95	51.02
Solyc04g005670.1.1	Tomato	cytosol	54.38	50.74
TraesCS4A01G487800.1	Wheat	cytosol	33.95	49.61
CDY62015	Canola	nucleus	54.38	49.4
CDX81631	Canola	nucleus	53.58	49.39
Bra026838.1-P	Field mustard	nucleus	53.32	49.39
AT1G14330.1	Thale cress	nucleus	57.29	48.98
KRH63378	Soybean	cytosol	57.29	48.98
KRH54527	Soybean	cytosol	57.03	48.75
PGSC0003DMT400007346	Potato	nucleus	55.7	48.5
CDY60836	Canola	cytosol	48.81	48.42
Solyc03g113010.1.1	Tomato	cytosol	56.5	48.3
CDY49094	Canola	nucleus	54.11	48.11
Os11t0602800-01	Rice	nucleus	54.91	47.92
KRH56929	Soybean	cytosol	50.93	47.17
Bra017407.1-P	Field mustard	nucleus, plastid	54.91	47.15
PGSC0003DMT400046591	Potato	extracellular	57.03	47.15
KRH03453	Soybean	cytosol	50.93	47.06
Bra026575.1-P	Field mustard	nucleus	55.17	46.85
CDY09349	Canola	nucleus	55.17	46.85
AT1G26930.1	Thale cress	cytosol	51.99	46.56
CDY62176	Canola	nucleus	55.17	46.53
Zm00001d007596_P001	Maize	nucleus, plastid	54.38	46.49
Zm00001d048898_P001	Maize	cytosol	53.58	46.44
OQU83795	Sorghum	cytosol	54.91	46.41
CDY17425	Canola	cytosol	48.81	45.89
TraesCS4A01G489600.1	Wheat	cytosol	45.89	45.77
TraesCS4A01G489300.1	Wheat	cytosol	46.15	45.67
CDY03028	Canola	cytosol	54.38	45.66
AT2G02870.1	Thale cress	nucleus	56.5	45.61
CDY46430	Canola	cytosol	51.19	45.31
Bra024801.1-P	Field mustard	nucleus	54.38	45.25
CDY45190	Canola	nucleus	54.38	45.25
CDY52764	Canola	cytosol	50.93	45.18
Bra016297.1-P	Field mustard	cytosol	50.93	45.07
CDY16205	Canola	nucleus	50.4	44.92
TraesCS4A01G492300.1	Wheat	cytosol, golgi, plastid	45.62	44.68
HORVU2Hr1G057140.1	Barley	cytosol	22.02	44.62
HORVU2Hr1G057150.1	Barley	cytosol	22.02	44.62
PGSC0003DMT400059324	Potato	cytosol	55.44	43.54
CDY33754	Canola	nucleus	27.06	40.8
GSMUA_Achr3P23350_001	Banana	cytosol, extracellular	43.5	40.69
VIT_01s0026g02080.t01	Wine grape	nucleus	57.82	40.3
KRH45883	Soybean	cytosol	55.7	38.96
KRG99114	Soybean	cytosol	55.7	38.96
PGSC0003DMT400007391	Potato	cytosol	13.79	38.81
KRH70694	Soybean	cytosol	55.44	38.78
HORVU7Hr1G000010.5	Barley	cytosol	44.83	38.58
KRH74828	Soybean	cytosol	54.91	38.55
GSMUA_Achr9P30470_001	Banana	cytosol	38.99	37.6
GSMUA_Achr11P...	Banana	cytosol	39.52	33.86
HORVU7Hr1G000070.1	Barley	cytosol	46.95	33.71
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	14.06	33.54
TraesCS4A01G491100.1	Wheat	cytosol	46.42	33.27
Solyc05g007220.2.1	Tomato	nucleus	54.11	31.68
TraesCS4A01G493200.1	Wheat	cytosol, plasma membrane	36.07	28.69
GSMUA_Achr6P24370_001	Banana	cytosol	17.24	18.73
GSMUA_AchrUn_...	Banana	cytosol	17.24	18.21
GSMUA_Achr6P04050_001	Banana	cytosol	21.75	18.02
GSMUA_Achr4P20790_001	Banana	extracellular	17.77	17.77
GSMUA_Achr7P08330_001	Banana	cytosol	18.04	17.26
GSMUA_Achr8P28270_001	Banana	cytosol	17.24	16.93
GSMUA_Achr6P20750_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	16.98	16.41
GSMUA_Achr3P29560_001	Banana	cytosol	17.77	16.3
GSMUA_Achr3P16120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	16.45	16.23
GSMUA_Achr7P27010_001	Banana	cytosol	17.77	16.11
GSMUA_Achr10P...	Banana	cytosol	22.02	15.96
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	16.98	15.69
GSMUA_Achr2P22090_001	Banana	cytosol	14.85	14.85
GSMUA_Achr6P31190_001	Banana	mitochondrion	15.38	14.11
GSMUA_Achr2P18470_001	Banana	cytosol	15.38	13.62
GSMUA_Achr4P03630_001	Banana	plasma membrane	16.45	7.3

Protein Annotations

EnsemblPlants:GSMUA_Achr1P21630_001	EnsemblPlants:GSMUA_Achr1T21630_001	EnsemblPlantsGene:GSMUA_Achr1G21630_001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF133
PFAM:PF01344	SEG:seg	SUPFAM:SSF117281	UniParc:UPI00029491BE	UniProt:M0S1X1	MapMan:35.1

Description

F-box/kelch-repeat protein SKIP11 [Source:GMGC_GENE;Acc:GSMUA_Achr1G21630_001]

Coordinates

chr1:+:16243393..16245112

Molecular Weight (calculated)

42294.0 Da

IEP (calculated)

5.156

GRAVY (calculated)

-0.378

Length

377 amino acids

Sequence
(BLAST)

001: MLEGNSLGNN KRPLDEELEE QEDQIKRKNS PQHHDTPDLE DVQRTTDNSD HHENDMDYND CSTFINPLGR DLTVSCLLLL SRSYYGTVAS VNSSFRSLVR
101: SGELYRLRRQ MEISEHWVYF SCNVLEWEAY DPYRECWIAV PKMPPTESFM CSDKESLAVG TDLLVFGKEL NSYMVLRYSI LTNSWSPGVV MNSPRCLFGS
201: ASLGEKAVVA GGTNAEGDMC SGVFMDRKFY VIGGMDSDRN VLTCGEEYDF ERRSWRVIPD MSAGLHGASG APPLVAVVKN ELYAAHYADK EVRKYIKENN
301: TWVTLGQLPE RSVSMNGWGL AFRACGARLI VIGGPRESHG GVIELNSWIP NGRPPIWNMM ASKHSGSFVY NCAVMGC

Best Arabidopsis Sequence Match ( AT2G02870.2 )
(BLAST)

001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC

Arabidopsis Description

SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.