Factsheet for VIT_01s0026g02080.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14330.1	VIT_18s0001g14860.t01	AT5G42190.1	21798944
AT2G02870.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005670.1.1	Tomato	cytosol	53.23	71.29
PGSC0003DMT400007346	Potato	nucleus	56.75	70.9
VIT_17s0000g05920.t01	Wine grape	cytosol	58.04	70.88
CDY33755	Canola	cytosol	15.9	69.92
CDY60836	Canola	cytosol	46.4	66.05
AT1G14330.1	Thale cress	nucleus	53.6	65.76
Bra026838.1-P	Field mustard	nucleus	48.98	65.11
TraesCS4D01G286700.1	Wheat	cytosol	39.56	64.85
CDY62015	Canola	nucleus	49.72	64.82
CDX81631	Canola	nucleus	48.8	64.55
Bra017407.1-P	Field mustard	nucleus, plastid	52.13	64.24
Solyc04g005870.1.1	Tomato	cytosol	6.28	64.15
Bra026575.1-P	Field mustard	nucleus	52.13	63.51
CDY17425	Canola	cytosol	46.95	63.34
CDY09349	Canola	nucleus	51.94	63.29
CDY62176	Canola	nucleus	52.13	63.09
CDY49094	Canola	nucleus	49.35	62.97
AT2G02870.1	Thale cress	nucleus	54.16	62.74
AT1G26930.1	Thale cress	cytosol	48.8	62.71
KXG30756	Sorghum	cytosol	48.98	62.35
GSMUA_Achr4P09990_001	Banana	cytosol	49.35	62.24
TraesCS4A01G493800.1	Wheat	cytosol	28.84	62.15
TraesCS6A01G306000.1	Wheat	cytosol	48.8	62.12
TraesCS6D01G285100.1	Wheat	cytosol, nucleus, plastid	48.8	62.12
Bra024801.1-P	Field mustard	nucleus	51.94	62.03
Zm00001d052253_P001	Maize	cytosol	48.43	61.94
CDY03028	Canola	cytosol	51.39	61.92
TraesCS6B01G334300.1	Wheat	cytosol, nucleus, plastid	48.61	61.88
HORVU6Hr1G075590.1	Barley	cytosol, nucleus, plastid	48.61	61.88
CDY45190	Canola	nucleus	51.76	61.81
CDY52764	Canola	cytosol	48.43	61.65
Bra016297.1-P	Field mustard	cytosol	48.43	61.5
CDY46430	Canola	cytosol	48.43	61.5
CDY16205	Canola	nucleus	47.87	61.23
PGSC0003DMT400059324	Potato	cytosol	54.16	61.04
KRH45883	Soybean	cytosol	60.63	60.85
Os02t0748300-01	Rice	cytosol	47.87	60.8
GSMUA_Achr8P01380_001	Banana	cytosol	42.14	60.0
KRG99114	Soybean	cytosol	59.7	59.93
KRH74828	Soybean	cytosol	59.33	59.78
GSMUA_Achr7P20970_001	Banana	cytosol	43.44	59.49
KRH70694	Soybean	cytosol	58.6	58.81
Os03t0171600-01	Rice	cytosol	46.58	58.47
GSMUA_Achr4P00520_001	Banana	cytosol	41.96	58.35
GSMUA_Achr1P21630_001	Banana	cytosol	40.3	57.82
KXG40080	Sorghum	cytosol	45.66	57.71
CDY33754	Canola	nucleus	26.62	57.6
Zm00001d048310_P001	Maize	cytosol	45.47	57.48
Zm00001d027856_P001	Maize	cytosol	45.1	56.88
TraesCS4A01G016200.1	Wheat	cytosol	45.1	56.61
HORVU4Hr1G075310.1	Barley	cytosol	45.66	56.26
TraesCS7A01G004600.1	Wheat	cytosol	37.71	56.04
VIT_16s0039g01470.t01	Wine grape	cytosol	38.63	54.43
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	15.71	53.8
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	43.81	53.5
TraesCS7D01G007100.1	Wheat	cytosol	36.78	53.49
OQU91835	Sorghum	cytosol, nucleus, plastid	43.44	52.93
GSMUA_Achr8P17960_001	Banana	nucleus	40.67	52.88
GSMUA_Achr10P...	Banana	nucleus	42.51	52.87
Zm00001d033012_P001	Maize	cytosol	43.44	52.69
TraesCS7D01G005100.1	Wheat	cytosol	20.89	52.56
VIT_06s0004g02980.t01	Wine grape	cytosol	34.57	51.37
GSMUA_Achr2P14920_001	Banana	mitochondrion	44.55	50.42
TraesCS4A01G487800.1	Wheat	cytosol	23.66	49.61
Os11t0602800-01	Rice	nucleus	38.82	48.61
HORVU2Hr1G057150.1	Barley	cytosol	16.64	48.39
HORVU2Hr1G057140.1	Barley	cytosol	16.64	48.39
Zm00001d048898_P001	Maize	cytosol	38.26	47.59
TraesCS4A01G492300.1	Wheat	cytosol, golgi, plastid	33.46	47.01
Zm00001d007596_P001	Maize	nucleus, plastid	38.26	46.94
TraesCS4A01G489600.1	Wheat	cytosol	32.72	46.83
TraesCS4A01G489300.1	Wheat	cytosol	32.9	46.72
OQU83795	Sorghum	cytosol	37.89	45.96
GSMUA_Achr4P24130_001	Banana	nucleus	43.81	45.84
Solyc05g007220.2.1	Tomato	nucleus	54.34	45.65
GSMUA_Achr3P01570_001	Banana	golgi	40.85	45.19
PGSC0003DMT400007391	Potato	cytosol	10.54	42.54
HORVU7Hr1G000010.5	Barley	cytosol	34.2	42.24
HORVU7Hr1G000070.1	Barley	cytosol	36.41	37.52
TraesCS4A01G491100.1	Wheat	cytosol	35.67	36.69
TraesCS4A01G493200.1	Wheat	cytosol, plasma membrane	28.47	32.49
VIT_14s0068g02150.t01	Wine grape	cytosol	24.4	27.67
VIT_15s0046g02710.t01	Wine grape	cytosol	14.42	21.73
VIT_01s0010g03320.t01	Wine grape	cytosol	14.97	21.04
VIT_15s0046g02790.t01	Wine grape	cytosol	10.72	21.01
VIT_07s0151g00770.t01	Wine grape	cytosol	13.31	20.87
VIT_06s0004g00860.t01	Wine grape	cytosol	16.45	20.37
VIT_11s0016g05050.t01	Wine grape	cytosol	15.9	20.09
VIT_04s0008g02380.t01	Wine grape	cytosol, peroxisome, plastid	13.12	19.19
VIT_12s0055g00910.t01	Wine grape	cytosol	16.82	19.0
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	16.64	18.87
VIT_10s0003g03730.t01	Wine grape	cytosol	7.02	16.52

Protein Annotations

EntrezGene:100249995	wikigene:100249995	Gene3D:2.120.10.80	MapMan:35.1	ProteinID:CCB56565	ProteinID:CCB56565.1
UniProt:F6HPD7	EMBL:FN596002	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625
GO:GO:0042787	GO:GO:0043161	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EntrezGene:LOC100249995
wikigene:LOC100249995	PFAM:PF01344	PANTHER:PTHR24413	PANTHER:PTHR24413:SF138	SMART:SM00612	SUPFAM:SSF117281
TIGR:TC68515	UniParc:UPI0001982AD7	ArrayExpress:VIT_01s0026g02080	EnsemblPlantsGene:VIT_01s0026g02080	EnsemblPlants:VIT_01s0026g02080.t01	unigene:Vvi.8364
RefSeq:XP_003631294	RefSeq:XP_003631294.1	RefSeq:XP_010652237.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:11464781..11468003

Molecular Weight (calculated)

60520.6 Da

IEP (calculated)

4.560

GRAVY (calculated)

-0.405

Length

541 amino acids

Sequence
(BLAST)

001: MLEGRSCLFS RALPSSCEQE SNWSYMTYRV EKKEKRPLEI DAEEELQVED ANGKCPPDID AQEKQVIPAI KRRRPLEFDS EEEFRINLAI GKCPLEIDLE
101: DQHHPDVAGG KRPLEIDEEE PQLSSFFKLT EAHESVEPTP TISDLTLSPE DQSHKQGPPE DESDKPGINL SLSLADQSNS QHQAEFNSDL DSLIQPIGRD
201: LSISCLIRCS RSDYGFIASL NRSFRSIIRS GELYRERRKN GVIEHWIYFS CQLLEWEAFD PIRHRWMRLP TMTFNECFMC SDKESLAVGT ELLVFGKEVM
301: SHVIYRYSIL TNSWSSGMSM NAPRCLFGSA SLGEIAILAG GCDSQGNILS SAELYNSETG AWEMLPSMNK PRKMCSGVFM DGKFYVIGGI GGSDSKPLPC
401: GEEYNLQTRV WTEIADMSPV RSGAPRENET AAAEAPPLVA VVNNELYAAD YADMEVRKYE KESRLWLTVG RLPERAVSMN GWGLAFRACG DKLVVIGGPR
501: ALGEGFIELN SWVPSEGPPQ WNVLAVKQSG NFVYNCAVMG C

Best Arabidopsis Sequence Match ( AT2G02870.2 )
(BLAST)

001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC

Arabidopsis Description

SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.