Factsheet for Solyc04g005670.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007346	Potato	nucleus	97.03	90.53
Solyc04g005870.1.1	Tomato	cytosol	10.64	81.13
CDY33755	Canola	cytosol	21.29	69.92
TraesCS4D01G286700.1	Wheat	cytosol	51.73	63.33
TraesCS4A01G493800.1	Wheat	cytosol	38.37	61.75
Solyc03g113010.1.1	Tomato	cytosol	67.08	61.45
CDY62015	Canola	nucleus	62.13	60.48
Bra026838.1-P	Field mustard	nucleus	60.89	60.44
CDX81631	Canola	nucleus	61.14	60.39
AT1G26930.1	Thale cress	cytosol	62.87	60.33
AT1G14330.1	Thale cress	nucleus	65.59	60.09
CDY60836	Canola	cytosol	56.44	60.0
CDY49094	Canola	nucleus	62.62	59.67
Bra017407.1-P	Field mustard	nucleus, plastid	64.11	59.0
Bra026575.1-P	Field mustard	nucleus	63.86	58.11
CDY09349	Canola	nucleus	63.61	57.88
CDY62176	Canola	nucleus	63.86	57.72
Bra016297.1-P	Field mustard	cytosol	60.64	57.51
CDY46430	Canola	cytosol	60.64	57.51
CDY52764	Canola	cytosol	60.4	57.41
Solyc11g069320.1.1	Tomato	plastid	30.94	57.34
TraesCS6A01G306000.1	Wheat	cytosol	60.15	57.18
TraesCS6D01G285100.1	Wheat	cytosol, nucleus, plastid	60.15	57.18
Zm00001d052253_P001	Maize	cytosol	59.65	56.97
CDY16205	Canola	nucleus	59.65	56.97
AT2G02870.1	Thale cress	nucleus	65.84	56.96
TraesCS6B01G334300.1	Wheat	cytosol, nucleus, plastid	59.9	56.94
CDY17425	Canola	cytosol	56.44	56.86
Bra024801.1-P	Field mustard	nucleus	63.61	56.73
CDY45190	Canola	nucleus	63.61	56.73
HORVU6Hr1G075590.1	Barley	cytosol, nucleus, plastid	59.65	56.71
GSMUA_Achr4P09990_001	Banana	cytosol	60.15	56.64
CDY03028	Canola	cytosol	62.87	56.57
KXG30756	Sorghum	cytosol	59.16	56.24
Os02t0748300-01	Rice	cytosol	59.16	56.1
GSMUA_Achr7P20970_001	Banana	cytosol	53.47	54.68
GSMUA_Achr1P21630_001	Banana	cytosol	50.74	54.38
TraesCS7A01G004600.1	Wheat	cytosol	48.51	53.85
GSMUA_Achr4P00520_001	Banana	cytosol	51.49	53.47
VIT_01s0026g02080.t01	Wine grape	nucleus	71.29	53.23
GSMUA_Achr8P01380_001	Banana	cytosol	50.0	53.16
KRH74828	Soybean	cytosol	70.54	53.07
TraesCS7D01G005100.1	Wheat	cytosol	28.22	53.02
KRH45883	Soybean	cytosol	70.54	52.88
KRG99114	Soybean	cytosol	70.3	52.69
TraesCS7D01G007100.1	Wheat	cytosol	48.02	52.15
Zm00001d027856_P001	Maize	cytosol	55.2	51.98
KRH70694	Soybean	cytosol	69.31	51.95
KXG40080	Sorghum	cytosol	54.95	51.87
Zm00001d048310_P001	Maize	cytosol	54.95	51.87
Os03t0171600-01	Rice	cytosol	54.7	51.28
TraesCS4A01G016200.1	Wheat	cytosol	54.21	50.81
CDY33754	Canola	nucleus	31.19	50.4
HORVU4Hr1G075310.1	Barley	cytosol	54.46	50.11
OQU91835	Sorghum	cytosol, nucleus, plastid	54.95	50.0
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	54.7	49.89
Os11t0602800-01	Rice	nucleus	52.97	49.54
HORVU2Hr1G057150.1	Barley	cytosol	22.77	49.46
HORVU2Hr1G057140.1	Barley	cytosol	22.77	49.46
Zm00001d033012_P001	Maize	cytosol	54.21	49.1
GSMUA_Achr8P17960_001	Banana	nucleus	50.25	48.8
TraesCS4A01G487800.1	Wheat	cytosol	30.94	48.45
GSMUA_Achr10P...	Banana	nucleus	51.24	47.59
Zm00001d048898_P001	Maize	cytosol	50.99	47.36
Solyc05g007220.2.1	Tomato	nucleus	74.01	46.43
OQU83795	Sorghum	cytosol	51.24	46.41
Zm00001d007596_P001	Maize	nucleus, plastid	50.49	46.26
TraesCS4A01G492300.1	Wheat	cytosol, golgi, plastid	43.56	45.71
GSMUA_Achr2P14920_001	Banana	mitochondrion	53.47	45.19
TraesCS4A01G489600.1	Wheat	cytosol	41.58	44.44
TraesCS4A01G489300.1	Wheat	cytosol	41.83	44.36
GSMUA_Achr3P01570_001	Banana	golgi	50.74	41.92
GSMUA_Achr4P24130_001	Banana	nucleus	52.23	40.81
HORVU7Hr1G000010.5	Barley	cytosol	43.56	40.18
HORVU7Hr1G000070.1	Barley	cytosol	44.55	34.29
TraesCS4A01G491100.1	Wheat	cytosol	43.81	33.65
TraesCS4A01G493200.1	Wheat	cytosol, plasma membrane	36.39	31.01
Solyc07g009410.2.1	Tomato	cytosol	27.23	24.66
Solyc07g042960.1.1	Tomato	cytosol, mitochondrion	9.16	21.02
Solyc01g104980.2.1	Tomato	cytosol, plastid	23.76	20.21
Solyc09g065400.1.1	Tomato	cytosol	16.83	19.71
Solyc01g005970.2.1	Tomato	cytosol	21.04	19.45
Solyc06g008690.1.1	Tomato	cytosol	16.09	18.84
Solyc01g022740.2.1	Tomato	cytosol	20.3	18.76
Solyc01g094520.2.1	Tomato	nucleus	18.07	18.3
Solyc02g021600.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	16.58	16.67
Solyc07g042950.1.1	Tomato	cytosol	6.19	14.04

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625
GO:GO:0042787	GO:GO:0043161	InterPro:IPR015915	UniProt:K4BNH3	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PFAM:PF01344	PANTHER:PTHR24413	PANTHER:PTHR24413:SF138	SMART:SM00612	SUPFAM:SSF117281	EnsemblPlantsGene:Solyc04g005670.1
EnsemblPlants:Solyc04g005670.1.1	UniParc:UPI00027663F4	:	:	:	:

Description

No Description!

Coordinates

chr4:+:444808..446022

Molecular Weight (calculated)

44874.3 Da

IEP (calculated)

7.425

GRAVY (calculated)

-0.378

Length

404 amino acids

Sequence
(BLAST)

001: MIEVQNGKRP LENNQEDEVV QRKLPKLSDA RDGKEVVLAS PHDQAGDQRH DEDTSSLIPS IGRDNSVSSL IHCSRSDFGA IASLNRSFRS LISSGELYRL
101: RRQQGVVEHW VYFSCHLRQW EAFDPIRRRW MHLPSMNFNE CFVFSDKESL AVGTELLVFG KEILSHVIYR YSLLTNSWSA GTEMNAPRCL FGSASSGEIA
201: ILAGGCDSQG NILSSAELYN SETGTWKTLP SMNKRRKMCS AVFMDKKFYV IGGIGGTESS NALLTCGEEY DLKTGKWTEI SSMSPVRARG DMPATSEAPP
301: LVAVVNNDLY AADYADMEVR KYDKKNKTWA TIGRLPERAA SMNGWGLAFR ACGDRLIVIG GPRTMGEGHI EVNSWVPSEG PPQWNLLGRK RSGSFVYNCA
401: VMGC

Best Arabidopsis Sequence Match ( AT2G02870.2 )
(BLAST)

001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC

Arabidopsis Description

SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.