Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60836 | Canola | cytosol | 86.78 | 91.58 |
| Bra017407.1-P | Field mustard | nucleus, plastid | 95.76 | 87.47 |
| CDY03028 | Canola | cytosol | 88.78 | 79.29 |
| CDY45190 | Canola | nucleus | 88.78 | 78.59 |
| AT2G02870.1 | Thale cress | nucleus | 90.52 | 77.73 |
| CDY09349 | Canola | nucleus | 85.79 | 77.48 |
| CDY62176 | Canola | nucleus | 85.54 | 76.73 |
| CDY62015 | Canola | nucleus | 72.07 | 69.64 |
| CDX81631 | Canola | nucleus | 70.07 | 68.7 |
| CDY33754 | Canola | nucleus | 42.64 | 68.4 |
| CDY49094 | Canola | nucleus | 72.07 | 68.16 |
| CDY33755 | Canola | cytosol | 18.2 | 59.35 |
| TraesCS4D01G286700.1 | Wheat | cytosol | 47.13 | 57.27 |
| Solyc04g005670.1.1 | Tomato | cytosol | 56.86 | 56.44 |
| PGSC0003DMT400007346 | Potato | nucleus | 59.6 | 55.2 |
| CDY52764 | Canola | cytosol | 58.1 | 54.82 |
| CDY46430 | Canola | cytosol | 58.1 | 54.69 |
| CDY16205 | Canola | nucleus | 57.36 | 54.37 |
| TraesCS4A01G493800.1 | Wheat | cytosol | 33.67 | 53.78 |
| GSMUA_Achr4P09990_001 | Banana | cytosol | 55.86 | 52.21 |
| TraesCS6D01G285100.1 | Wheat | cytosol, nucleus, plastid | 55.11 | 52.0 |
| TraesCS6A01G306000.1 | Wheat | cytosol | 54.61 | 51.53 |
| TraesCS6B01G334300.1 | Wheat | cytosol, nucleus, plastid | 54.61 | 51.53 |
| HORVU6Hr1G075590.1 | Barley | cytosol, nucleus, plastid | 54.36 | 51.29 |
| Os02t0748300-01 | Rice | cytosol | 54.11 | 50.94 |
| PGSC0003DMT400059324 | Potato | cytosol | 60.85 | 50.83 |
| Zm00001d052253_P001 | Maize | cytosol | 53.62 | 50.83 |
| KXG30756 | Sorghum | cytosol | 53.37 | 50.35 |
| CDY70379 | Canola | cytosol | 19.7 | 50.0 |
| PGSC0003DMT400091785 | Potato | cytosol, mitochondrion, plastid | 19.7 | 50.0 |
| GSMUA_Achr7P20970_001 | Banana | cytosol | 49.13 | 49.87 |
| TraesCS7A01G004600.1 | Wheat | cytosol | 45.14 | 49.73 |
| TraesCS4A01G016200.1 | Wheat | cytosol | 53.12 | 49.42 |
| GSMUA_Achr8P01380_001 | Banana | cytosol | 46.63 | 49.21 |
| GSMUA_Achr4P00520_001 | Banana | cytosol | 47.63 | 49.1 |
| GSMUA_Achr1P21630_001 | Banana | cytosol | 45.89 | 48.81 |
| Os03t0171600-01 | Rice | cytosol | 52.12 | 48.49 |
| KXG40080 | Sorghum | cytosol | 51.62 | 48.36 |
| HORVU4Hr1G075310.1 | Barley | cytosol | 52.62 | 48.06 |
| CDX68177 | Canola | cytosol | 49.88 | 47.96 |
| Zm00001d048310_P001 | Maize | cytosol | 51.12 | 47.9 |
| CDX73096 | Canola | cytosol | 47.63 | 47.63 |
| Zm00001d027856_P001 | Maize | cytosol | 50.87 | 47.55 |
| CDX85842 | Canola | cytosol | 50.12 | 47.07 |
| VIT_01s0026g02080.t01 | Wine grape | nucleus | 63.34 | 46.95 |
| KRH45883 | Soybean | cytosol | 63.09 | 46.94 |
| CDX96551 | Canola | cytosol | 47.38 | 46.8 |
| TraesCS7D01G007100.1 | Wheat | cytosol | 43.39 | 46.77 |
| Zm00001d014203_P001 | Maize | cytosol, nucleus, plastid | 51.62 | 46.73 |
| OQU91835 | Sorghum | cytosol, nucleus, plastid | 51.12 | 46.17 |
| KRG99114 | Soybean | cytosol | 61.85 | 46.01 |
| KRH74828 | Soybean | cytosol | 61.35 | 45.81 |
| KRH70694 | Soybean | cytosol | 61.1 | 45.45 |
| Zm00001d033012_P001 | Maize | cytosol | 50.37 | 45.29 |
| TraesCS7D01G005100.1 | Wheat | cytosol | 24.19 | 45.12 |
| GSMUA_Achr8P17960_001 | Banana | nucleus | 46.63 | 44.95 |
| GSMUA_Achr10P... | Banana | nucleus | 46.88 | 43.22 |
| TraesCS4A01G487800.1 | Wheat | cytosol | 27.68 | 43.02 |
| HORVU2Hr1G057140.1 | Barley | cytosol | 19.95 | 43.01 |
| HORVU2Hr1G057150.1 | Barley | cytosol | 19.95 | 43.01 |
| Os11t0602800-01 | Rice | nucleus | 45.89 | 42.59 |
| Zm00001d048898_P001 | Maize | cytosol | 46.13 | 42.53 |
| GSMUA_Achr2P14920_001 | Banana | mitochondrion | 49.88 | 41.84 |
| Zm00001d007596_P001 | Maize | nucleus, plastid | 45.14 | 41.04 |
| TraesCS4A01G492300.1 | Wheat | cytosol, golgi, plastid | 39.4 | 41.04 |
| OQU83795 | Sorghum | cytosol | 45.64 | 41.03 |
| TraesCS4A01G489300.1 | Wheat | cytosol | 38.9 | 40.94 |
| TraesCS4A01G489600.1 | Wheat | cytosol | 38.4 | 40.74 |
| GSMUA_Achr4P24130_001 | Banana | nucleus | 48.88 | 37.91 |
| GSMUA_Achr3P01570_001 | Banana | golgi | 45.89 | 37.63 |
| CDY31534 | Canola | cytosol | 34.16 | 36.53 |
| CDX80156 | Canola | cytosol | 34.41 | 36.41 |
| Solyc05g007220.2.1 | Tomato | nucleus | 58.35 | 36.34 |
| HORVU7Hr1G000010.5 | Barley | cytosol | 39.4 | 36.07 |
| Solyc04g005870.1.1 | Tomato | cytosol | 4.49 | 33.96 |
| CDX82682 | Canola | cytosol | 24.69 | 31.63 |
| CDY66938 | Canola | cytosol, mitochondrion | 13.72 | 31.25 |
| HORVU7Hr1G000070.1 | Barley | cytosol | 40.9 | 31.24 |
| CDY53460 | Canola | cytosol | 13.22 | 30.11 |
| TraesCS4A01G491100.1 | Wheat | cytosol | 39.4 | 30.04 |
| TraesCS4A01G493200.1 | Wheat | cytosol, plasma membrane | 35.16 | 29.75 |
| CDY28493 | Canola | cytosol | 29.18 | 28.47 |
| CDY34175 | Canola | cytosol | 29.18 | 28.47 |
| CDY13683 | Canola | cytosol | 29.43 | 27.25 |
| CDY65956 | Canola | cytosol | 12.72 | 27.13 |
| CDY36146 | Canola | cytosol | 28.18 | 27.1 |
| CDY64780 | Canola | cytosol | 29.18 | 26.96 |
| PGSC0003DMT400007391 | Potato | cytosol | 8.98 | 26.87 |
| CDY63005 | Canola | cytosol | 27.93 | 26.86 |
| CDY69929 | Canola | cytosol | 27.93 | 26.86 |
| CDY52395 | Canola | cytosol | 28.93 | 26.79 |
| CDX90239 | Canola | cytosol | 25.94 | 26.2 |
| CDY49979 | Canola | cytosol | 26.43 | 25.98 |
| CDY12345 | Canola | cytosol | 28.68 | 25.27 |
| CDY01301 | Canola | cytosol | 9.23 | 23.57 |
| CDY49977 | Canola | cytosol | 23.19 | 19.79 |
| CDX96091 | Canola | cytosol | 17.71 | 19.03 |
| CDY04697 | Canola | cytosol | 10.47 | 18.83 |
| CDY12647 | Canola | cytosol | 16.96 | 18.78 |
| CDY36145 | Canola | cytosol | 16.21 | 18.57 |
| CDY66857 | Canola | cytosol | 16.46 | 18.54 |
| CDY01812 | Canola | cytosol | 17.21 | 18.5 |
| CDY22982 | Canola | cytosol | 15.96 | 18.5 |
| CDY30645 | Canola | nucleus | 10.22 | 18.39 |
| CDY51562 | Canola | cytosol | 16.46 | 18.38 |
| CDY33348 | Canola | cytosol | 8.23 | 18.33 |
| CDX82306 | Canola | cytosol | 15.71 | 18.21 |
| CDY08233 | Canola | mitochondrion | 19.7 | 18.16 |
| CDY26117 | Canola | cytosol | 19.7 | 18.16 |
| CDY70128 | Canola | cytosol | 15.21 | 18.1 |
| CDX90085 | Canola | plastid | 15.46 | 17.97 |
| CDY11811 | Canola | plastid | 15.46 | 17.97 |
| CDY02451 | Canola | cytosol | 19.45 | 17.93 |
| CDY10574 | Canola | cytosol | 19.45 | 17.93 |
| CDY24045 | Canola | mitochondrion | 19.45 | 17.93 |
| CDY33062 | Canola | mitochondrion, plastid | 19.45 | 17.93 |
| CDY64382 | Canola | plastid | 15.21 | 17.84 |
| CDY58793 | Canola | cytosol | 15.96 | 17.83 |
| CDX99248 | Canola | cytosol | 15.46 | 17.82 |
| CDY35074 | Canola | cytosol | 9.23 | 17.7 |
| CDY18573 | Canola | cytosol | 15.21 | 17.53 |
| CDY58259 | Canola | cytosol | 14.96 | 17.29 |
| CDY52247 | Canola | cytosol | 13.72 | 17.19 |
| CDY03923 | Canola | cytosol | 14.46 | 17.16 |
| CDX81755 | Canola | cytosol | 16.46 | 16.92 |
| CDY15708 | Canola | cytosol | 14.46 | 16.91 |
| CDX99882 | Canola | mitochondrion, plastid | 16.71 | 16.83 |
| CDY26295 | Canola | mitochondrion, plastid | 16.46 | 16.58 |
| CDY64883 | Canola | golgi, plastid | 16.71 | 16.3 |
| CDX76807 | Canola | cytosol | 14.96 | 16.26 |
| CDY34765 | Canola | cytosol | 14.96 | 16.13 |
| CDX96822 | Canola | extracellular, vacuole | 16.96 | 15.74 |
| CDY54825 | Canola | cytosol | 7.48 | 15.54 |
| CDY17172 | Canola | cytosol | 5.24 | 14.58 |
| CDY00415 | Canola | mitochondrion | 7.73 | 14.49 |
| CDY35075 | Canola | cytosol | 6.48 | 14.13 |
| CDY01300 | Canola | cytosol | 7.73 | 13.84 |
| CDY15707 | Canola | cytosol, plastid | 11.47 | 13.03 |
| CDY03921 | Canola | cytosol, extracellular, plasma membrane | 10.22 | 11.61 |
Protein Annotations
| EnsemblPlants:CDY17425 | EnsemblPlantsGene:GSBRNA2T00095556001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF138 | PFAM:PF01344 |
| ProteinID:CDY17425 | ProteinID:CDY17425.1 | SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI0004EDACDB |
| UniProt:A0A078FSC4 | MapMan:35.1 | : | : | : | : |
Description
BnaC09g21120DBnaC09g21120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSC4]
Coordinates
chrLK032073:-:145954..147507
Molecular Weight (calculated)
44252.3 Da
IEP (calculated)
4.946
GRAVY (calculated)
-0.278
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MLENRSPDSC LSSRVFSSSR VSYMYPEEDK LSNVEAVGGE IRPTKSLKLL GFCITYDSDS SDCSLSCDGS QEQSDSNGAD SSDSHSLFNE IGRDSSIDCL
101: LRCSRSDYAS IASLNRNFRS LVKSGDIYKL RKQNGFVEHW VYFSCQLLEW VAFDPVERKW MQLPTMPSSV TFMCADKESL AVGTDLLVLG KDGFSSHVIY
201: RYSLLTNSWS SGMEMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWVSL PRMNKPRKMC SGVFMDGKFY VIGGIGGAES KALTCGEEYD
301: LETKKWTPIP DLSPPRSRAE QAAPPLVAVV DNQLYAADHA DMEVRKACGE RLIVIGGPKY SGGGFIELNS WVPRDGGPPQ WTLLDRKHSP NFVYNCAVMG
401: C
101: LRCSRSDYAS IASLNRNFRS LVKSGDIYKL RKQNGFVEHW VYFSCQLLEW VAFDPVERKW MQLPTMPSSV TFMCADKESL AVGTDLLVLG KDGFSSHVIY
201: RYSLLTNSWS SGMEMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWVSL PRMNKPRKMC SGVFMDGKFY VIGGIGGAES KALTCGEEYD
301: LETKKWTPIP DLSPPRSRAE QAAPPLVAVV DNQLYAADHA DMEVRKACGE RLIVIGGPKY SGGGFIELNS WVPRDGGPPQ WTLLDRKHSP NFVYNCAVMG
401: C
001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
Arabidopsis Description
SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.