Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11811 | Canola | plastid | 68.12 | 63.19 |
| CDX90085 | Canola | plastid | 67.81 | 62.9 |
| AT1G27420.1 | Thale cress | cytosol, plastid | 66.25 | 61.27 |
| CDY36145 | Canola | cytosol | 66.88 | 61.14 |
| CDY66857 | Canola | cytosol | 67.81 | 60.96 |
| CDY70128 | Canola | cytosol | 62.81 | 59.64 |
| CDY54825 | Canola | cytosol | 35.94 | 59.59 |
| CDY15708 | Canola | cytosol | 60.62 | 56.56 |
| CDY03923 | Canola | cytosol | 59.38 | 56.21 |
| CDY64382 | Canola | plastid | 58.44 | 54.68 |
| CDY15707 | Canola | cytosol, plastid | 48.75 | 44.19 |
| CDY03921 | Canola | cytosol, extracellular, plasma membrane | 40.31 | 36.54 |
| CDY12647 | Canola | cytosol | 36.25 | 32.04 |
| CDY01812 | Canola | cytosol | 35.94 | 30.83 |
| CDX96091 | Canola | cytosol | 35.0 | 30.03 |
| CDY64883 | Canola | golgi, plastid | 35.62 | 27.74 |
| CDY35074 | Canola | cytosol | 13.12 | 20.1 |
| CDY51562 | Canola | cytosol | 20.94 | 18.66 |
| CDX99882 | Canola | mitochondrion, plastid | 23.12 | 18.59 |
| CDY01301 | Canola | cytosol | 9.06 | 18.47 |
| CDY26117 | Canola | cytosol | 25.0 | 18.39 |
| CDY08233 | Canola | mitochondrion | 25.0 | 18.39 |
| CDY26295 | Canola | mitochondrion, plastid | 22.81 | 18.34 |
| CDY02451 | Canola | cytosol | 24.69 | 18.16 |
| CDY10574 | Canola | cytosol | 24.69 | 18.16 |
| CDY58793 | Canola | cytosol | 20.0 | 17.83 |
| CDY33062 | Canola | mitochondrion, plastid | 24.06 | 17.7 |
| CDY24045 | Canola | mitochondrion | 24.06 | 17.7 |
| CDX82306 | Canola | cytosol | 18.75 | 17.34 |
| CDY22982 | Canola | cytosol | 18.44 | 17.05 |
| CDY65956 | Canola | cytosol | 10.0 | 17.02 |
| CDY18573 | Canola | cytosol | 18.44 | 16.95 |
| CDY58259 | Canola | cytosol | 18.12 | 16.71 |
| CDX99248 | Canola | cytosol | 18.12 | 16.67 |
| CDY17172 | Canola | cytosol | 7.5 | 16.67 |
| CDY34175 | Canola | cytosol | 20.62 | 16.06 |
| CDY28493 | Canola | cytosol | 20.31 | 15.82 |
| CDY31534 | Canola | cytosol | 18.44 | 15.73 |
| CDX80156 | Canola | cytosol | 18.44 | 15.57 |
| CDY46430 | Canola | cytosol | 20.31 | 15.26 |
| CDY30645 | Canola | nucleus | 10.62 | 15.25 |
| CDY33754 | Canola | nucleus | 11.88 | 15.2 |
| CDX76807 | Canola | cytosol | 17.5 | 15.18 |
| CDY52764 | Canola | cytosol | 20.0 | 15.06 |
| CDY16205 | Canola | nucleus | 19.69 | 14.89 |
| CDY04697 | Canola | cytosol | 10.31 | 14.8 |
| CDY34765 | Canola | cytosol | 17.19 | 14.78 |
| CDX82682 | Canola | cytosol | 14.38 | 14.7 |
| CDY60836 | Canola | cytosol | 17.19 | 14.47 |
| CDX81755 | Canola | cytosol | 17.19 | 14.1 |
| CDY13683 | Canola | cytosol | 19.06 | 14.09 |
| CDY62015 | Canola | nucleus | 18.12 | 13.98 |
| CDY49094 | Canola | nucleus | 18.44 | 13.92 |
| CDY17425 | Canola | cytosol | 17.19 | 13.72 |
| CDY09349 | Canola | nucleus | 18.75 | 13.51 |
| CDX73096 | Canola | cytosol | 16.88 | 13.47 |
| CDX68177 | Canola | cytosol | 17.5 | 13.43 |
| CDY63005 | Canola | cytosol | 17.5 | 13.43 |
| CDX96822 | Canola | extracellular, vacuole | 18.12 | 13.43 |
| CDX96551 | Canola | cytosol | 16.88 | 13.3 |
| CDX81631 | Canola | nucleus | 16.88 | 13.2 |
| CDY62176 | Canola | nucleus | 18.44 | 13.2 |
| CDY36146 | Canola | cytosol | 17.19 | 13.19 |
| CDY69929 | Canola | cytosol | 17.19 | 13.19 |
| CDY52395 | Canola | cytosol | 17.81 | 13.16 |
| CDX85842 | Canola | cytosol | 17.5 | 13.11 |
| CDX90239 | Canola | cytosol | 16.25 | 13.1 |
| CDY53460 | Canola | cytosol | 7.19 | 13.07 |
| CDY49979 | Canola | cytosol | 16.56 | 12.99 |
| CDY12345 | Canola | cytosol | 18.44 | 12.97 |
| CDY01300 | Canola | cytosol | 9.06 | 12.95 |
| CDY64780 | Canola | cytosol | 17.5 | 12.9 |
| CDY45190 | Canola | nucleus | 18.12 | 12.8 |
| CDY03028 | Canola | cytosol | 17.81 | 12.69 |
| CDY66938 | Canola | cytosol, mitochondrion | 6.88 | 12.5 |
| CDY70379 | Canola | cytosol | 5.94 | 12.03 |
| CDY00415 | Canola | mitochondrion | 7.81 | 11.68 |
| CDY33348 | Canola | cytosol | 6.56 | 11.67 |
| CDY49977 | Canola | cytosol | 14.06 | 9.57 |
| CDY33755 | Canola | cytosol | 3.12 | 8.13 |
| CDY35075 | Canola | cytosol | 4.38 | 7.61 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | UniProt:A0A078IQP0 | EnsemblPlants:CDY52247 | ProteinID:CDY52247 | ProteinID:CDY52247.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00005223001 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 |
| PANTHER:PTHR24412 | PANTHER:PTHR24412:SF377 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 |
| UniParc:UPI0004EED9C0 | SEG:seg | : | : | : | : |
Description
BnaC08g20190DBnaC08g20190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQP0]
Coordinates
chrLK033071:+:503..1629
Molecular Weight (calculated)
36192.2 Da
IEP (calculated)
8.455
GRAVY (calculated)
-0.110
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MVESSSLIPG LVDDLAELCL SRIPRSSFQI ISQVCWRWRR FLRSERYGAV RKLTGSVEEL MCLLVYDKYW EVFDGSGNQL GRIPHIPGPL KGGFGLVVLD
101: GGKIVFIGGR YNCVASADVY EFNPATNRWR KLADMNIPRH NFTYAVVDGL LYVIRGLSSD NVSILNAETN QWSLIDCPHS HSFSGFAFSF NSKLFVVGNR
201: WRFIDIYDPK TETWEKLDSG QTLSVSSYTV VRNKAYFFDW FKSGMGVFDP EKNSWSSVSV LPSEKCAFKY RLGQWNNKVI LFSRGCEALS GDLDKEDAAK
301: WIATPIKPSG LHPTSVLINF
101: GGKIVFIGGR YNCVASADVY EFNPATNRWR KLADMNIPRH NFTYAVVDGL LYVIRGLSSD NVSILNAETN QWSLIDCPHS HSFSGFAFSF NSKLFVVGNR
201: WRFIDIYDPK TETWEKLDSG QTLSVSSYTV VRNKAYFFDW FKSGMGVFDP EKNSWSSVSV LPSEKCAFKY RLGQWNNKVI LFSRGCEALS GDLDKEDAAK
301: WIATPIKPSG LHPTSVLINF
001: MVVESSSSPI IPGLTDDVAE LCVSKIPRSS FQITSQVCRR WRSFLRSQHF AAVRKLTGTV EEFLCVLMES ECGRDVYWEV FDASGNKLGQ IPPVPGPLKR
101: GFGVAVLDGG KIVFFGGYTE VEGSGINSTT VSASADVYEF DPANNSWRKL AGMNIPRYNF AFAEVNGLLY VIRGYSTDTY SLSNAEVYNP KTNQWSLMHC
201: PNRPVWRGFA FAFSSKLYAV GNGSRFIDIY DPKTQTWEEL NSEQSVSVYS YTVVRNKVYF MDRNMPGRLG VFDPEENSWS SVFVPPREGG FWVRLGVWNN
301: KVLLFSRVCG HETLMYDLDK EKGSKWRVCD QIKPSASQLA SVLINF
101: GFGVAVLDGG KIVFFGGYTE VEGSGINSTT VSASADVYEF DPANNSWRKL AGMNIPRYNF AFAEVNGLLY VIRGYSTDTY SLSNAEVYNP KTNQWSLMHC
201: PNRPVWRGFA FAFSSKLYAV GNGSRFIDIY DPKTQTWEEL NSEQSVSVYS YTVVRNKVYF MDRNMPGRLG VFDPEENSWS SVFVPPREGG FWVRLGVWNN
301: KVLLFSRVCG HETLMYDLDK EKGSKWRVCD QIKPSASQLA SVLINF
Arabidopsis Description
Putative F-box/kelch-repeat protein At1g27420 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZJ3]
SUBAcon: [cytosol,plastid]
SUBAcon: [cytosol,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.