Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024801.1-P | Field mustard | nucleus | 98.44 | 97.57 |
| CDY45190 | Canola | nucleus | 98.44 | 97.57 |
| CDY17425 | Canola | cytosol | 79.29 | 88.78 |
| AT2G02870.1 | Thale cress | nucleus | 90.87 | 87.37 |
| CDY09349 | Canola | nucleus | 86.19 | 87.16 |
| CDY60836 | Canola | cytosol | 73.27 | 86.58 |
| CDY62176 | Canola | nucleus | 86.19 | 86.58 |
| CDY33755 | Canola | cytosol | 22.49 | 82.11 |
| CDX81631 | Canola | nucleus | 70.38 | 77.26 |
| CDY62015 | Canola | nucleus | 71.05 | 76.87 |
| CDY49094 | Canola | nucleus | 71.27 | 75.47 |
| CDY33754 | Canola | nucleus | 40.31 | 72.4 |
| Solyc04g005670.1.1 | Tomato | cytosol | 56.57 | 62.87 |
| TraesCS4D01G286700.1 | Wheat | cytosol | 45.88 | 62.42 |
| Solyc04g005870.1.1 | Tomato | cytosol | 7.35 | 62.26 |
| PGSC0003DMT400007346 | Potato | nucleus | 59.69 | 61.89 |
| CDY46430 | Canola | cytosol | 57.68 | 60.8 |
| CDY52764 | Canola | cytosol | 57.46 | 60.71 |
| CDY16205 | Canola | nucleus | 56.79 | 60.28 |
| TraesCS4A01G493800.1 | Wheat | cytosol | 33.18 | 59.36 |
| TraesCS6D01G285100.1 | Wheat | cytosol, nucleus, plastid | 54.34 | 57.41 |
| TraesCS6A01G306000.1 | Wheat | cytosol | 53.9 | 56.94 |
| TraesCS6B01G334300.1 | Wheat | cytosol, nucleus, plastid | 53.9 | 56.94 |
| GSMUA_Achr4P09990_001 | Banana | cytosol | 54.34 | 56.88 |
| HORVU6Hr1G075590.1 | Barley | cytosol, nucleus, plastid | 53.67 | 56.71 |
| PGSC0003DMT400059324 | Potato | cytosol | 60.58 | 56.67 |
| Zm00001d052253_P001 | Maize | cytosol | 52.56 | 55.79 |
| GSMUA_Achr7P20970_001 | Banana | cytosol | 49.0 | 55.7 |
| Os02t0748300-01 | Rice | cytosol | 52.78 | 55.63 |
| KXG30756 | Sorghum | cytosol | 52.34 | 55.29 |
| GSMUA_Achr4P00520_001 | Banana | cytosol | 47.44 | 54.76 |
| GSMUA_Achr1P21630_001 | Banana | cytosol | 45.66 | 54.38 |
| TraesCS4A01G016200.1 | Wheat | cytosol | 52.12 | 54.29 |
| GSMUA_Achr8P01380_001 | Banana | cytosol | 45.88 | 54.21 |
| TraesCS7A01G004600.1 | Wheat | cytosol | 43.65 | 53.85 |
| KXG40080 | Sorghum | cytosol | 51.22 | 53.74 |
| Os03t0171600-01 | Rice | cytosol | 51.45 | 53.6 |
| Zm00001d027856_P001 | Maize | cytosol | 51.0 | 53.38 |
| Zm00001d048310_P001 | Maize | cytosol | 50.56 | 53.04 |
| HORVU4Hr1G075310.1 | Barley | cytosol | 51.67 | 52.85 |
| CDX73096 | Canola | cytosol | 46.99 | 52.62 |
| CDX68177 | Canola | cytosol | 48.78 | 52.52 |
| Zm00001d014203_P001 | Maize | cytosol, nucleus, plastid | 51.45 | 52.14 |
| CDY70379 | Canola | cytosol | 18.26 | 51.9 |
| CDX96551 | Canola | cytosol | 46.77 | 51.72 |
| KRH45883 | Soybean | cytosol | 61.92 | 51.58 |
| OQU91835 | Sorghum | cytosol, nucleus, plastid | 51.0 | 51.58 |
| CDX85842 | Canola | cytosol | 49.0 | 51.52 |
| VIT_01s0026g02080.t01 | Wine grape | nucleus | 61.92 | 51.39 |
| TraesCS7D01G007100.1 | Wheat | cytosol | 42.54 | 51.34 |
| KRH74828 | Soybean | cytosol | 61.25 | 51.21 |
| KRG99114 | Soybean | cytosol | 61.25 | 51.02 |
| KRH70694 | Soybean | cytosol | 60.8 | 50.65 |
| Zm00001d033012_P001 | Maize | cytosol | 50.11 | 50.45 |
| TraesCS7D01G005100.1 | Wheat | cytosol | 24.05 | 50.23 |
| GSMUA_Achr8P17960_001 | Banana | nucleus | 45.66 | 49.28 |
| PGSC0003DMT400091785 | Potato | cytosol, mitochondrion, plastid | 16.93 | 48.1 |
| GSMUA_Achr10P... | Banana | nucleus | 46.55 | 48.05 |
| Os11t0602800-01 | Rice | nucleus | 45.43 | 47.22 |
| TraesCS4A01G487800.1 | Wheat | cytosol | 26.95 | 46.9 |
| Zm00001d048898_P001 | Maize | cytosol | 44.32 | 45.75 |
| GSMUA_Achr2P14920_001 | Banana | mitochondrion | 48.55 | 45.61 |
| Zm00001d007596_P001 | Maize | nucleus, plastid | 44.32 | 45.12 |
| TraesCS4A01G492300.1 | Wheat | cytosol, golgi, plastid | 38.53 | 44.94 |
| HORVU2Hr1G057140.1 | Barley | cytosol | 18.49 | 44.62 |
| HORVU2Hr1G057150.1 | Barley | cytosol | 18.49 | 44.62 |
| OQU83795 | Sorghum | cytosol | 44.1 | 44.39 |
| TraesCS4A01G489300.1 | Wheat | cytosol | 37.64 | 44.36 |
| TraesCS4A01G489600.1 | Wheat | cytosol | 37.19 | 44.18 |
| GSMUA_Achr3P01570_001 | Banana | golgi | 45.66 | 41.92 |
| GSMUA_Achr4P24130_001 | Banana | nucleus | 47.88 | 41.59 |
| CDY31534 | Canola | cytosol | 34.52 | 41.33 |
| CDX80156 | Canola | cytosol | 34.74 | 41.16 |
| PGSC0003DMT400007391 | Potato | cytosol | 12.25 | 41.04 |
| Solyc05g007220.2.1 | Tomato | nucleus | 58.13 | 40.53 |
| HORVU7Hr1G000010.5 | Barley | cytosol | 38.08 | 39.04 |
| CDY66938 | Canola | cytosol, mitochondrion | 14.25 | 36.36 |
| CDX82682 | Canola | cytosol | 23.83 | 34.19 |
| CDY53460 | Canola | cytosol | 13.36 | 34.09 |
| HORVU7Hr1G000070.1 | Barley | cytosol | 39.64 | 33.9 |
| TraesCS4A01G491100.1 | Wheat | cytosol | 38.08 | 32.51 |
| CDY65956 | Canola | cytosol | 13.14 | 31.38 |
| CDY28493 | Canola | cytosol | 28.51 | 31.14 |
| CDY34175 | Canola | cytosol | 28.29 | 30.9 |
| CDY13683 | Canola | cytosol | 28.95 | 30.02 |
| TraesCS4A01G493200.1 | Wheat | cytosol, plasma membrane | 31.63 | 29.96 |
| CDY52395 | Canola | cytosol | 28.51 | 29.56 |
| CDY36146 | Canola | cytosol | 26.95 | 29.02 |
| CDY63005 | Canola | cytosol | 26.73 | 28.78 |
| CDY69929 | Canola | cytosol | 26.73 | 28.78 |
| CDY64780 | Canola | cytosol | 27.62 | 28.57 |
| CDX90239 | Canola | cytosol | 24.05 | 27.2 |
| CDY12345 | Canola | cytosol | 27.17 | 26.81 |
| CDY49979 | Canola | cytosol | 24.28 | 26.72 |
| CDY01301 | Canola | cytosol | 8.46 | 24.2 |
| CDY04697 | Canola | cytosol | 10.47 | 21.08 |
| CDY49977 | Canola | cytosol | 22.05 | 21.06 |
| CDY30645 | Canola | nucleus | 10.24 | 20.63 |
| CDY51562 | Canola | cytosol | 16.26 | 20.33 |
| CDY35074 | Canola | cytosol | 9.35 | 20.1 |
| CDY33348 | Canola | cytosol | 8.02 | 20.0 |
| CDY66857 | Canola | cytosol | 15.81 | 19.94 |
| CDY70128 | Canola | cytosol | 14.92 | 19.88 |
| CDY58793 | Canola | cytosol | 15.81 | 19.78 |
| CDY12647 | Canola | cytosol | 15.81 | 19.61 |
| CDX96091 | Canola | cytosol | 16.26 | 19.57 |
| CDX81755 | Canola | cytosol | 16.93 | 19.49 |
| CDY36145 | Canola | cytosol | 15.14 | 19.43 |
| CDY18573 | Canola | cytosol | 14.92 | 19.25 |
| CDY24045 | Canola | mitochondrion | 18.49 | 19.08 |
| CDY22982 | Canola | cytosol | 14.7 | 19.08 |
| CDY01812 | Canola | cytosol | 15.81 | 19.03 |
| CDY58259 | Canola | cytosol | 14.7 | 19.02 |
| CDY64382 | Canola | plastid | 14.48 | 19.01 |
| CDY33062 | Canola | mitochondrion, plastid | 18.26 | 18.85 |
| CDX90085 | Canola | plastid | 14.48 | 18.84 |
| CDY11811 | Canola | plastid | 14.48 | 18.84 |
| CDX82306 | Canola | cytosol | 14.48 | 18.79 |
| CDY08233 | Canola | mitochondrion | 18.04 | 18.62 |
| CDY35075 | Canola | cytosol | 7.57 | 18.48 |
| CDX99248 | Canola | cytosol | 14.25 | 18.39 |
| CDY02451 | Canola | cytosol | 17.82 | 18.39 |
| CDY10574 | Canola | cytosol | 17.82 | 18.39 |
| CDY26117 | Canola | cytosol | 17.82 | 18.39 |
| CDY26295 | Canola | mitochondrion, plastid | 16.04 | 18.09 |
| CDY15708 | Canola | cytosol | 13.81 | 18.08 |
| CDX96822 | Canola | extracellular, vacuole | 17.37 | 18.06 |
| CDY03923 | Canola | cytosol | 13.59 | 18.05 |
| CDX99882 | Canola | mitochondrion, plastid | 15.81 | 17.84 |
| CDY52247 | Canola | cytosol | 12.69 | 17.81 |
| CDX76807 | Canola | cytosol | 14.48 | 17.62 |
| CDY17172 | Canola | cytosol | 5.57 | 17.36 |
| CDY34765 | Canola | cytosol | 14.25 | 17.2 |
| CDY64883 | Canola | golgi, plastid | 15.37 | 16.79 |
| CDY54825 | Canola | cytosol | 7.13 | 16.58 |
| CDY00415 | Canola | mitochondrion | 7.8 | 16.36 |
| CDY01300 | Canola | cytosol | 8.02 | 16.07 |
| CDY15707 | Canola | cytosol, plastid | 11.14 | 14.16 |
| CDY03921 | Canola | cytosol, extracellular, plasma membrane | 9.35 | 11.9 |
Protein Annotations
| EnsemblPlants:CDY03028 | EnsemblPlantsGene:GSBRNA2T00115349001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF138 | PFAM:PF01344 |
| ProteinID:CDY03028 | ProteinID:CDY03028.1 | SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI0004EC1708 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC07g21990D
Coordinates
chrLK031939:-:471325..473276
Molecular Weight (calculated)
49959.8 Da
IEP (calculated)
5.028
GRAVY (calculated)
-0.437
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MLENRSPDSC LSSRLFSEST WSKSFMFPQD DDDNKLSNGK KRALEVVGEI RGTKSLKLMG FSITYDSDSS DYSEDGSIQE QEQGDSNNNG GDSSDSHSLI
101: NEIGRDNSID CLIRCSRSDY GSIASLSRNF RSLVKSGDIY KLRRQNGFVE HWVYFSCQLL EWVAFDPVER RWMQLPTMPS SVTFMCADKE SLAVGTDLLV
201: LGKDDFSSHV IYRYSLLTNS WSSGMKMNSP RCLFGSASLG EIAIFAGGCD SQGKILDFAE MYNSELQTWV TLPRMNNPRK MCSGVFMDGR FYVIGGIGGA
301: DAKALTCGEE YDLEAKKWTE VPDLSPPRSR ADQADARPAA EAPPLVAVVD NQLYAADHAD MEVRKYDKEK KKWLTIGRLP ERAGSVNGWG LAFRACGERL
401: IVIGGPKYSG GGFIELNSWI PRDGDPPQWT LLDRKHSPNF VYNCAVMGC
101: NEIGRDNSID CLIRCSRSDY GSIASLSRNF RSLVKSGDIY KLRRQNGFVE HWVYFSCQLL EWVAFDPVER RWMQLPTMPS SVTFMCADKE SLAVGTDLLV
201: LGKDDFSSHV IYRYSLLTNS WSSGMKMNSP RCLFGSASLG EIAIFAGGCD SQGKILDFAE MYNSELQTWV TLPRMNNPRK MCSGVFMDGR FYVIGGIGGA
301: DAKALTCGEE YDLEAKKWTE VPDLSPPRSR ADQADARPAA EAPPLVAVVD NQLYAADHAD MEVRKYDKEK KKWLTIGRLP ERAGSVNGWG LAFRACGERL
401: IVIGGPKYSG GGFIELNSWI PRDGDPPQWT LLDRKHSPNF VYNCAVMGC
001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
Arabidopsis Description
SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.