Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026575.1-P | Field mustard | nucleus | 97.32 | 97.97 |
| CDY09349 | Canola | nucleus | 97.09 | 97.75 |
| CDY03028 | Canola | cytosol | 86.58 | 86.19 |
| CDY17425 | Canola | cytosol | 76.73 | 85.54 |
| CDY45190 | Canola | nucleus | 86.35 | 85.21 |
| AT2G02870.1 | Thale cress | nucleus | 88.14 | 84.37 |
| CDY60836 | Canola | cytosol | 70.92 | 83.42 |
| CDY33755 | Canola | cytosol | 21.7 | 78.86 |
| CDY62015 | Canola | nucleus | 70.92 | 76.39 |
| CDY49094 | Canola | nucleus | 71.36 | 75.24 |
| CDX81631 | Canola | nucleus | 68.68 | 75.06 |
| CDY33754 | Canola | nucleus | 38.93 | 69.6 |
| Solyc04g005670.1.1 | Tomato | cytosol | 57.72 | 63.86 |
| TraesCS4D01G286700.1 | Wheat | cytosol | 46.98 | 63.64 |
| PGSC0003DMT400007346 | Potato | nucleus | 60.85 | 62.82 |
| CDY46430 | Canola | cytosol | 59.51 | 62.44 |
| CDY52764 | Canola | cytosol | 59.28 | 62.35 |
| CDY16205 | Canola | nucleus | 58.39 | 61.7 |
| TraesCS4A01G493800.1 | Wheat | cytosol | 34.0 | 60.56 |
| Solyc04g005870.1.1 | Tomato | cytosol | 7.16 | 60.38 |
| GSMUA_Achr4P09990_001 | Banana | cytosol | 55.26 | 57.58 |
| Zm00001d052253_P001 | Maize | cytosol | 54.14 | 57.21 |
| TraesCS6D01G285100.1 | Wheat | cytosol, nucleus, plastid | 54.36 | 57.18 |
| GSMUA_Achr8P01380_001 | Banana | cytosol | 48.55 | 57.11 |
| TraesCS6A01G306000.1 | Wheat | cytosol | 54.14 | 56.94 |
| TraesCS6B01G334300.1 | Wheat | cytosol, nucleus, plastid | 54.14 | 56.94 |
| PGSC0003DMT400059324 | Potato | cytosol | 61.07 | 56.88 |
| HORVU6Hr1G075590.1 | Barley | cytosol, nucleus, plastid | 53.91 | 56.71 |
| KXG30756 | Sorghum | cytosol | 53.69 | 56.47 |
| GSMUA_Achr7P20970_001 | Banana | cytosol | 49.66 | 56.2 |
| Os02t0748300-01 | Rice | cytosol | 52.8 | 55.4 |
| KXG40080 | Sorghum | cytosol | 53.02 | 55.37 |
| TraesCS4A01G016200.1 | Wheat | cytosol | 53.24 | 55.22 |
| GSMUA_Achr1P21630_001 | Banana | cytosol | 46.53 | 55.17 |
| TraesCS7A01G004600.1 | Wheat | cytosol | 44.74 | 54.95 |
| Zm00001d048310_P001 | Maize | cytosol | 52.57 | 54.91 |
| Zm00001d027856_P001 | Maize | cytosol | 52.57 | 54.78 |
| GSMUA_Achr4P00520_001 | Banana | cytosol | 47.65 | 54.76 |
| Os03t0171600-01 | Rice | cytosol | 52.57 | 54.52 |
| HORVU4Hr1G075310.1 | Barley | cytosol | 53.02 | 53.99 |
| CDX68177 | Canola | cytosol | 50.11 | 53.72 |
| CDX73096 | Canola | cytosol | 48.1 | 53.62 |
| Zm00001d014203_P001 | Maize | cytosol, nucleus, plastid | 52.57 | 53.05 |
| CDX96551 | Canola | cytosol | 47.87 | 52.71 |
| OQU91835 | Sorghum | cytosol, nucleus, plastid | 52.35 | 52.7 |
| CDX85842 | Canola | cytosol | 50.34 | 52.69 |
| TraesCS7D01G007100.1 | Wheat | cytosol | 43.4 | 52.15 |
| KRH45883 | Soybean | cytosol | 62.86 | 52.13 |
| VIT_01s0026g02080.t01 | Wine grape | nucleus | 63.09 | 52.13 |
| KRH74828 | Soybean | cytosol | 62.19 | 51.77 |
| TraesCS7D01G005100.1 | Wheat | cytosol | 24.83 | 51.63 |
| KRG99114 | Soybean | cytosol | 61.97 | 51.39 |
| Zm00001d033012_P001 | Maize | cytosol | 51.23 | 51.35 |
| CDY70379 | Canola | cytosol | 18.12 | 51.27 |
| KRH70694 | Soybean | cytosol | 61.52 | 51.02 |
| GSMUA_Achr8P17960_001 | Banana | nucleus | 47.43 | 50.96 |
| GSMUA_Achr10P... | Banana | nucleus | 48.77 | 50.11 |
| PGSC0003DMT400091785 | Potato | cytosol, mitochondrion, plastid | 17.23 | 48.73 |
| TraesCS4A01G487800.1 | Wheat | cytosol | 27.74 | 48.06 |
| Os11t0602800-01 | Rice | nucleus | 46.09 | 47.69 |
| GSMUA_Achr2P14920_001 | Banana | mitochondrion | 50.34 | 47.07 |
| HORVU2Hr1G057140.1 | Barley | cytosol | 19.46 | 46.77 |
| HORVU2Hr1G057150.1 | Barley | cytosol | 19.46 | 46.77 |
| Zm00001d048898_P001 | Maize | cytosol | 45.41 | 46.67 |
| TraesCS4A01G492300.1 | Wheat | cytosol, golgi, plastid | 39.82 | 46.23 |
| OQU83795 | Sorghum | cytosol | 45.41 | 45.52 |
| Zm00001d007596_P001 | Maize | nucleus, plastid | 44.74 | 45.35 |
| TraesCS4A01G489600.1 | Wheat | cytosol | 38.26 | 45.24 |
| TraesCS4A01G489300.1 | Wheat | cytosol | 38.48 | 45.14 |
| GSMUA_Achr3P01570_001 | Banana | golgi | 48.32 | 44.17 |
| CDY31534 | Canola | cytosol | 35.35 | 42.13 |
| GSMUA_Achr4P24130_001 | Banana | nucleus | 48.55 | 41.97 |
| CDX80156 | Canola | cytosol | 35.57 | 41.95 |
| HORVU7Hr1G000010.5 | Barley | cytosol | 39.6 | 40.41 |
| PGSC0003DMT400007391 | Potato | cytosol | 12.08 | 40.3 |
| Solyc05g007220.2.1 | Tomato | nucleus | 57.94 | 40.22 |
| CDY66938 | Canola | cytosol, mitochondrion | 14.77 | 37.5 |
| CDY53460 | Canola | cytosol | 14.32 | 36.36 |
| CDX82682 | Canola | cytosol | 24.83 | 35.46 |
| HORVU7Hr1G000070.1 | Barley | cytosol | 40.72 | 34.67 |
| CDY65956 | Canola | cytosol | 14.32 | 34.04 |
| TraesCS4A01G491100.1 | Wheat | cytosol | 39.37 | 33.46 |
| CDY34175 | Canola | cytosol | 29.75 | 32.36 |
| CDY28493 | Canola | cytosol | 29.53 | 32.12 |
| TraesCS4A01G493200.1 | Wheat | cytosol, plasma membrane | 33.56 | 31.65 |
| CDY13683 | Canola | cytosol | 30.43 | 31.41 |
| CDY52395 | Canola | cytosol | 30.2 | 31.18 |
| CDY36146 | Canola | cytosol | 28.41 | 30.46 |
| CDY63005 | Canola | cytosol | 28.19 | 30.22 |
| CDY69929 | Canola | cytosol | 28.19 | 30.22 |
| CDY64780 | Canola | cytosol | 29.31 | 30.18 |
| CDX90239 | Canola | cytosol | 25.95 | 29.22 |
| CDY49979 | Canola | cytosol | 26.17 | 28.68 |
| CDY12345 | Canola | cytosol | 28.41 | 27.91 |
| CDY01301 | Canola | cytosol | 8.5 | 24.2 |
| CDY49977 | Canola | cytosol | 23.94 | 22.77 |
| CDY04697 | Canola | cytosol | 10.74 | 21.52 |
| CDY30645 | Canola | nucleus | 10.51 | 21.08 |
| CDY66857 | Canola | cytosol | 16.55 | 20.79 |
| CDY70128 | Canola | cytosol | 15.44 | 20.47 |
| CDY12647 | Canola | cytosol | 16.55 | 20.44 |
| CDX96091 | Canola | cytosol | 17.0 | 20.38 |
| CDX81755 | Canola | cytosol | 17.67 | 20.26 |
| CDY18573 | Canola | cytosol | 15.66 | 20.11 |
| CDY22982 | Canola | cytosol | 15.44 | 19.94 |
| CDY58259 | Canola | cytosol | 15.44 | 19.88 |
| CDY64382 | Canola | plastid | 15.21 | 19.88 |
| CDY01812 | Canola | cytosol | 16.55 | 19.84 |
| CDY36145 | Canola | cytosol | 15.44 | 19.71 |
| CDX82306 | Canola | cytosol | 15.21 | 19.65 |
| CDY35074 | Canola | cytosol | 9.17 | 19.62 |
| CDX99248 | Canola | cytosol | 15.21 | 19.54 |
| CDY33348 | Canola | cytosol | 7.83 | 19.44 |
| CDX90085 | Canola | plastid | 14.99 | 19.42 |
| CDY11811 | Canola | plastid | 14.99 | 19.42 |
| CDY03923 | Canola | cytosol | 14.54 | 19.23 |
| CDY15708 | Canola | cytosol | 14.54 | 18.95 |
| CDY51562 | Canola | cytosol | 15.21 | 18.94 |
| CDY08233 | Canola | mitochondrion | 18.12 | 18.62 |
| CDX96822 | Canola | extracellular, vacuole | 17.9 | 18.52 |
| CDY52247 | Canola | cytosol | 13.2 | 18.44 |
| CDY26117 | Canola | cytosol | 17.9 | 18.39 |
| CDY33062 | Canola | mitochondrion, plastid | 17.9 | 18.39 |
| CDY58793 | Canola | cytosol | 14.77 | 18.38 |
| CDY02451 | Canola | cytosol | 17.67 | 18.16 |
| CDY10574 | Canola | cytosol | 17.67 | 18.16 |
| CDY24045 | Canola | mitochondrion | 17.67 | 18.16 |
| CDX99882 | Canola | mitochondrion, plastid | 16.11 | 18.09 |
| CDY26295 | Canola | mitochondrion, plastid | 15.88 | 17.84 |
| CDY54825 | Canola | cytosol | 7.61 | 17.62 |
| CDX76807 | Canola | cytosol | 14.54 | 17.62 |
| CDY64883 | Canola | golgi, plastid | 16.11 | 17.52 |
| CDY34765 | Canola | cytosol | 14.54 | 17.47 |
| CDY35075 | Canola | cytosol | 7.16 | 17.39 |
| CDY17172 | Canola | cytosol | 5.37 | 16.67 |
| CDY00415 | Canola | mitochondrion | 7.61 | 15.89 |
| CDY01300 | Canola | cytosol | 7.61 | 15.18 |
| CDY15707 | Canola | cytosol, plastid | 11.63 | 14.73 |
| CDY03921 | Canola | cytosol, extracellular, plasma membrane | 9.62 | 12.18 |
Protein Annotations
| EnsemblPlants:CDY62176 | EnsemblPlantsGene:GSBRNA2T00036035001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF138 | PFAM:PF01344 |
| ProteinID:CDY62176 | ProteinID:CDY62176.1 | SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI0004EE90FF |
| UniProt:A0A078J9J4 | MapMan:35.1 | : | : | : | : |
Description
BnaCnng39410DBnaCnng39410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9J4]
Coordinates
chrLK034110:+:3673..5893
Molecular Weight (calculated)
49615.3 Da
IEP (calculated)
5.528
GRAVY (calculated)
-0.431
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEERSPDSC LSSRVFSTSR ISESTWSNSF MFPEHDDDGG DKLSNGKRAL EVASEIRPTK SLKLMGVSIQ YDSDSSDYSG TSQESDSNNN GGDSTDSHSL
101: FNEIGRDNSI DCLIRCSRSD YGSIASLSRN FRSLVKSGEI YRLRRQNGFV EHWVYFSCQP LEWVAFDPVE RRWMQLPTMP SSVTFMGADK ESLAVGTDLL
201: VLGQAGFSSY VIYRYSLLTN SWSSGMEMNS PRCLFGSASL GEIAIFAGGF DSQRKILDSA EMYNSELQTW TTLPMMNKPR KMCSGVFMDG KFYVIGGIGG
301: PDSKLLTCGE EYDLDTKKWT HIPDLSPPRS RADVSSANDA PPLVAVVNNQ LYAADHADME VRKYDKEKKR WLTVGRLPER AGSVNGWGLA FRACGERLIV
401: IGGPRNSGGG FIELNSWIPS DGGPPQWRLL DRKHSPNFVY NCAVMGC
101: FNEIGRDNSI DCLIRCSRSD YGSIASLSRN FRSLVKSGEI YRLRRQNGFV EHWVYFSCQP LEWVAFDPVE RRWMQLPTMP SSVTFMGADK ESLAVGTDLL
201: VLGQAGFSSY VIYRYSLLTN SWSSGMEMNS PRCLFGSASL GEIAIFAGGF DSQRKILDSA EMYNSELQTW TTLPMMNKPR KMCSGVFMDG KFYVIGGIGG
301: PDSKLLTCGE EYDLDTKKWT HIPDLSPPRS RADVSSANDA PPLVAVVNNQ LYAADHADME VRKYDKEKKR WLTVGRLPER AGSVNGWGLA FRACGERLIV
401: IGGPRNSGGG FIELNSWIPS DGGPPQWRLL DRKHSPNFVY NCAVMGC
001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
Arabidopsis Description
SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.