Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46430 | Canola | cytosol | 98.82 | 98.59 |
| Bra016297.1-P | Field mustard | cytosol | 98.35 | 98.12 |
| CDY16205 | Canola | nucleus | 88.94 | 89.36 |
| AT1G26930.1 | Thale cress | cytosol | 85.88 | 86.7 |
| CDY33755 | Canola | cytosol | 19.53 | 67.48 |
| CDY60836 | Canola | cytosol | 54.12 | 60.53 |
| Solyc04g005670.1.1 | Tomato | cytosol | 57.41 | 60.4 |
| CDY62015 | Canola | nucleus | 58.82 | 60.24 |
| TraesCS4D01G286700.1 | Wheat | cytosol | 46.59 | 60.0 |
| CDY62176 | Canola | nucleus | 62.35 | 59.28 |
| CDY09349 | Canola | nucleus | 61.88 | 59.23 |
| CDX81631 | Canola | nucleus | 56.94 | 59.17 |
| CDY49094 | Canola | nucleus | 58.82 | 58.96 |
| PGSC0003DMT400007346 | Potato | nucleus | 59.53 | 58.43 |
| TraesCS4A01G493800.1 | Wheat | cytosol | 34.35 | 58.17 |
| CDY17425 | Canola | cytosol | 54.82 | 58.1 |
| CDY45190 | Canola | nucleus | 61.41 | 57.62 |
| CDY03028 | Canola | cytosol | 60.71 | 57.46 |
| GSMUA_Achr8P01380_001 | Banana | cytosol | 47.29 | 52.89 |
| CDX73096 | Canola | cytosol | 49.88 | 52.87 |
| CDX68177 | Canola | cytosol | 51.76 | 52.76 |
| CDY33754 | Canola | nucleus | 30.82 | 52.4 |
| CDX85842 | Canola | cytosol | 52.24 | 51.99 |
| TraesCS6B01G334300.1 | Wheat | cytosol, nucleus, plastid | 51.76 | 51.76 |
| TraesCS6D01G285100.1 | Wheat | cytosol, nucleus, plastid | 51.76 | 51.76 |
| CDX96551 | Canola | cytosol | 49.41 | 51.72 |
| TraesCS6A01G306000.1 | Wheat | cytosol | 51.53 | 51.53 |
| TraesCS7A01G004600.1 | Wheat | cytosol | 44.0 | 51.37 |
| Zm00001d052253_P001 | Maize | cytosol | 51.06 | 51.3 |
| HORVU6Hr1G075590.1 | Barley | cytosol, nucleus, plastid | 51.29 | 51.29 |
| Solyc04g005870.1.1 | Tomato | cytosol | 6.35 | 50.94 |
| GSMUA_Achr1P21630_001 | Banana | cytosol | 45.18 | 50.93 |
| CDY70379 | Canola | cytosol | 18.82 | 50.63 |
| KXG30756 | Sorghum | cytosol | 50.59 | 50.59 |
| GSMUA_Achr4P09990_001 | Banana | cytosol | 51.06 | 50.58 |
| KXG40080 | Sorghum | cytosol | 50.82 | 50.47 |
| Os02t0748300-01 | Rice | cytosol | 50.35 | 50.23 |
| TraesCS4A01G016200.1 | Wheat | cytosol | 50.82 | 50.12 |
| PGSC0003DMT400059324 | Potato | cytosol | 56.47 | 50.0 |
| HORVU4Hr1G075310.1 | Barley | cytosol | 51.29 | 49.66 |
| KRH45883 | Soybean | cytosol | 62.82 | 49.54 |
| GSMUA_Achr7P20970_001 | Banana | cytosol | 45.88 | 49.37 |
| TraesCS7D01G007100.1 | Wheat | cytosol | 43.06 | 49.19 |
| Os03t0171600-01 | Rice | cytosol | 49.88 | 49.19 |
| Zm00001d027856_P001 | Maize | cytosol | 49.65 | 49.18 |
| Zm00001d048310_P001 | Maize | cytosol | 49.41 | 49.07 |
| TraesCS7D01G005100.1 | Wheat | cytosol | 24.71 | 48.84 |
| VIT_01s0026g02080.t01 | Wine grape | nucleus | 61.65 | 48.43 |
| KRG99114 | Soybean | cytosol | 60.94 | 48.05 |
| KRH74828 | Soybean | cytosol | 60.47 | 47.86 |
| Zm00001d014203_P001 | Maize | cytosol, nucleus, plastid | 49.88 | 47.86 |
| KRH70694 | Soybean | cytosol | 60.24 | 47.5 |
| GSMUA_Achr4P00520_001 | Banana | cytosol | 43.29 | 47.3 |
| OQU91835 | Sorghum | cytosol, nucleus, plastid | 49.18 | 47.07 |
| TraesCS4A01G487800.1 | Wheat | cytosol | 28.47 | 46.9 |
| Zm00001d048898_P001 | Maize | cytosol | 48.0 | 46.9 |
| Zm00001d033012_P001 | Maize | cytosol | 49.18 | 46.86 |
| PGSC0003DMT400091785 | Potato | cytosol, mitochondrion, plastid | 17.18 | 46.2 |
| Os11t0602800-01 | Rice | nucleus | 46.59 | 45.83 |
| HORVU2Hr1G057140.1 | Barley | cytosol | 19.76 | 45.16 |
| HORVU2Hr1G057150.1 | Barley | cytosol | 19.76 | 45.16 |
| GSMUA_Achr8P17960_001 | Banana | nucleus | 44.0 | 44.95 |
| Zm00001d007596_P001 | Maize | nucleus, plastid | 46.59 | 44.9 |
| GSMUA_Achr10P... | Banana | nucleus | 45.88 | 44.83 |
| OQU83795 | Sorghum | cytosol | 46.12 | 43.95 |
| CDY31534 | Canola | cytosol | 38.35 | 43.47 |
| CDX80156 | Canola | cytosol | 38.12 | 42.74 |
| TraesCS4A01G492300.1 | Wheat | cytosol, golgi, plastid | 38.59 | 42.6 |
| TraesCS4A01G489600.1 | Wheat | cytosol | 37.88 | 42.59 |
| TraesCS4A01G489300.1 | Wheat | cytosol | 38.12 | 42.52 |
| GSMUA_Achr2P14920_001 | Banana | mitochondrion | 47.53 | 42.26 |
| GSMUA_Achr3P01570_001 | Banana | golgi | 47.53 | 41.31 |
| PGSC0003DMT400007391 | Potato | cytosol | 12.0 | 38.06 |
| Solyc05g007220.2.1 | Tomato | nucleus | 57.18 | 37.73 |
| GSMUA_Achr4P24130_001 | Banana | nucleus | 45.41 | 37.33 |
| HORVU7Hr1G000010.5 | Barley | cytosol | 38.12 | 36.99 |
| CDY66938 | Canola | cytosol, mitochondrion | 14.59 | 35.23 |
| CDX82682 | Canola | cytosol | 25.18 | 34.19 |
| CDY53460 | Canola | cytosol | 13.88 | 33.52 |
| CDY65956 | Canola | cytosol | 14.59 | 32.98 |
| HORVU7Hr1G000070.1 | Barley | cytosol | 40.47 | 32.76 |
| TraesCS4A01G491100.1 | Wheat | cytosol | 39.29 | 31.75 |
| CDY28493 | Canola | cytosol | 29.88 | 30.9 |
| CDY34175 | Canola | cytosol | 29.88 | 30.9 |
| CDY52395 | Canola | cytosol | 30.59 | 30.02 |
| CDY13683 | Canola | cytosol | 30.12 | 29.56 |
| TraesCS4A01G493200.1 | Wheat | cytosol, plasma membrane | 32.24 | 28.9 |
| CDY63005 | Canola | cytosol | 28.24 | 28.78 |
| CDY36146 | Canola | cytosol | 28.0 | 28.54 |
| CDY69929 | Canola | cytosol | 27.76 | 28.3 |
| CDY64780 | Canola | cytosol | 28.71 | 28.11 |
| CDX90239 | Canola | cytosol | 25.88 | 27.71 |
| CDY49979 | Canola | cytosol | 26.35 | 27.45 |
| CDY12345 | Canola | cytosol | 28.47 | 26.59 |
| CDY01301 | Canola | cytosol | 9.18 | 24.84 |
| CDY49977 | Canola | cytosol | 23.53 | 21.28 |
| CDY04697 | Canola | cytosol | 11.06 | 21.08 |
| CDY30645 | Canola | nucleus | 11.06 | 21.08 |
| CDY51562 | Canola | cytosol | 17.65 | 20.89 |
| CDX81755 | Canola | cytosol | 19.06 | 20.77 |
| CDX96091 | Canola | cytosol | 18.12 | 20.64 |
| CDY01812 | Canola | cytosol | 18.12 | 20.64 |
| CDY12647 | Canola | cytosol | 17.41 | 20.44 |
| CDY18573 | Canola | cytosol | 16.71 | 20.4 |
| CDY58793 | Canola | cytosol | 17.18 | 20.33 |
| CDY64382 | Canola | plastid | 16.24 | 20.18 |
| CDY58259 | Canola | cytosol | 16.47 | 20.17 |
| CDX90085 | Canola | plastid | 16.24 | 20.0 |
| CDY11811 | Canola | plastid | 16.24 | 20.0 |
| CDY36145 | Canola | cytosol | 16.47 | 20.0 |
| CDY52247 | Canola | cytosol | 15.06 | 20.0 |
| CDY03923 | Canola | cytosol | 15.76 | 19.82 |
| CDY66857 | Canola | cytosol | 16.47 | 19.66 |
| CDX82306 | Canola | cytosol | 16.0 | 19.65 |
| CDY70128 | Canola | cytosol | 15.53 | 19.58 |
| CDY15708 | Canola | cytosol | 15.76 | 19.53 |
| CDY17172 | Canola | cytosol | 6.59 | 19.44 |
| CDY22982 | Canola | cytosol | 15.76 | 19.36 |
| CDX99248 | Canola | cytosol | 15.76 | 19.25 |
| CDX76807 | Canola | cytosol | 16.71 | 19.24 |
| CDY35074 | Canola | cytosol | 9.41 | 19.14 |
| CDY08233 | Canola | mitochondrion | 19.29 | 18.85 |
| CDY26117 | Canola | cytosol | 19.29 | 18.85 |
| CDY33062 | Canola | mitochondrion, plastid | 19.29 | 18.85 |
| CDY34765 | Canola | cytosol | 16.47 | 18.82 |
| CDX96822 | Canola | extracellular, vacuole | 19.06 | 18.75 |
| CDY24045 | Canola | mitochondrion | 18.82 | 18.39 |
| CDY33348 | Canola | cytosol | 7.76 | 18.33 |
| CDX99882 | Canola | mitochondrion, plastid | 16.94 | 18.09 |
| CDY64883 | Canola | golgi, plastid | 17.41 | 18.0 |
| CDY02451 | Canola | cytosol | 18.35 | 17.93 |
| CDY10574 | Canola | cytosol | 18.35 | 17.93 |
| CDY26295 | Canola | mitochondrion, plastid | 16.71 | 17.84 |
| CDY54825 | Canola | cytosol | 7.76 | 17.1 |
| CDY35075 | Canola | cytosol | 7.29 | 16.85 |
| CDY00415 | Canola | mitochondrion | 8.0 | 15.89 |
| CDY15707 | Canola | cytosol, plastid | 13.18 | 15.86 |
| CDY01300 | Canola | cytosol | 8.24 | 15.62 |
| CDY03921 | Canola | cytosol, extracellular, plasma membrane | 10.59 | 12.75 |
Protein Annotations
| EnsemblPlants:CDY52764 | EnsemblPlantsGene:GSBRNA2T00007808001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF138 | PFAM:PF01344 |
| ProteinID:CDY52764 | ProteinID:CDY52764.1 | SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI0004EB4F46 |
| UniProt:A0A078ITK6 | MapMan:35.1 | : | : | : | : |
Description
BnaC08g48530DBnaC08g48530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITK6]
Coordinates
chrLK033127:-:11588..13781
Molecular Weight (calculated)
47309.2 Da
IEP (calculated)
7.379
GRAVY (calculated)
-0.370
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MFEGRPRDSC LVSTLFTMPT HQETKWSFSI STKRPFLNDD ESHETDRRHR KKIHKFLNLD GGGDGENGSS DSGSLIPGMN KDDSISCLLR CSRADYCSIA
101: SVSRSLRALI RSGEIYRLRR LQGTLEHWVY FSCHLNEWEA FDPRSKRWMR LPSMPQNECF RYADKESLAV GTDLLVFGWE VSSYVIYRYS LLTNSWSTGK
201: SMNMPRCLFG SASCGEIAVL AGGCDSNGRI LDTAEMYNSE DQTWSVLPAM NKRRKMCSGV FMDGKFYVIG GIGVGEGNEP KVLTCGEEFD MKTRAWREIP
301: DMSPPRSNQG NGMSAAAMAP PLVAVVNDQL YAADHAGMAV RRYDKESRVW VQVGSLPDQA GSMNGWGLAF RACGDQVIVI GGPKAPGEGF IELNSWVPSH
401: GAPQWHLLGQ KQSVNFVYNC AVMSC
101: SVSRSLRALI RSGEIYRLRR LQGTLEHWVY FSCHLNEWEA FDPRSKRWMR LPSMPQNECF RYADKESLAV GTDLLVFGWE VSSYVIYRYS LLTNSWSTGK
201: SMNMPRCLFG SASCGEIAVL AGGCDSNGRI LDTAEMYNSE DQTWSVLPAM NKRRKMCSGV FMDGKFYVIG GIGVGEGNEP KVLTCGEEFD MKTRAWREIP
301: DMSPPRSNQG NGMSAAAMAP PLVAVVNDQL YAADHAGMAV RRYDKESRVW VQVGSLPDQA GSMNGWGLAF RACGDQVIVI GGPKAPGEGF IELNSWVPSH
401: GAPQWHLLGQ KQSVNFVYNC AVMSC
001: MFEGRPRDSC LVSTLFTMPS HKETKWSFLV SGKRSFLNND ESDLHFKKMY KLTTDSSEGE DNGSSSDSGT LIPGMNRDDS LSCLIRCSRA DYCSIASVNR
101: SLRSLIRSGE IYRLRRLQGT LEHWVYFSCH LNEWEAFDPR SKRWMHLPSM PQNECFRYAD KESLAVGTDL LVFGWEVSSY VIYRYSLLTN SWSTAKSMNM
201: PRCLFGSASY GEIAVLAGGC DSSGRILDTA ELYNYEDQTW LVLPGMNKRR KMCSGVFMDG KFYVIGGIGV GEENEPKVLT CGEEFDLKTR KWTEIPEMSP
301: PRSNQGNGMS AAAMAPPLVA VVNDQLYAAD HAGMAVRRYD KEKRVWNKVG NLPEQAGSMN GWGLAFRACG DRIIVIGGPK APGEGFIELN SWVPSVTTPE
401: WHLLGKKQSV NFVYNCAVMS C
101: SLRSLIRSGE IYRLRRLQGT LEHWVYFSCH LNEWEAFDPR SKRWMHLPSM PQNECFRYAD KESLAVGTDL LVFGWEVSSY VIYRYSLLTN SWSTAKSMNM
201: PRCLFGSASY GEIAVLAGGC DSSGRILDTA ELYNYEDQTW LVLPGMNKRR KMCSGVFMDG KFYVIGGIGV GEENEPKVLT CGEEFDLKTR KWTEIPEMSP
301: PRSNQGNGMS AAAMAPPLVA VVNDQLYAAD HAGMAVRRYD KEKRVWNKVG NLPEQAGSMN GWGLAFRACG DRIIVIGGPK APGEGFIELN SWVPSVTTPE
401: WHLLGKKQSV NFVYNCAVMS C
Arabidopsis Description
F-box/kelch-repeat protein At1g26930 [Source:UniProtKB/Swiss-Prot;Acc:Q84M94]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.