Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007843.1-P | Field mustard | cytosol | 99.19 | 99.19 |
| CDX76807 | Canola | cytosol | 96.51 | 97.29 |
| AT2G24540.1 | Thale cress | cytosol | 80.38 | 80.38 |
| VIT_04s0008g02380.t01 | Wine grape | cytosol, peroxisome, plastid | 53.49 | 53.78 |
| GSMUA_AchrUn_... | Banana | cytosol | 43.28 | 45.1 |
| KRH61941 | Soybean | plastid | 41.94 | 44.44 |
| KRH52601 | Soybean | extracellular, golgi | 47.58 | 44.36 |
| Zm00001d046921_P001 | Maize | cytosol | 39.25 | 37.06 |
| TraesCS7D01G483900.1 | Wheat | cytosol | 37.9 | 36.81 |
| Os06t0655500-01 | Rice | cytosol | 37.63 | 36.46 |
| EER90147 | Sorghum | cytosol | 38.44 | 36.39 |
| Zm00001d046922_P001 | Maize | cytosol | 37.37 | 36.1 |
| TraesCS7A01G496600.1 | Wheat | cytosol | 37.37 | 36.1 |
| TraesCS5A01G544300.1 | Wheat | extracellular, plasma membrane | 26.88 | 34.97 |
| CDX99882 | Canola | mitochondrion, plastid | 36.29 | 33.92 |
| CDY26295 | Canola | mitochondrion, plastid | 36.29 | 33.92 |
| CDX82306 | Canola | cytosol | 24.19 | 26.01 |
| CDY18573 | Canola | cytosol | 24.19 | 25.86 |
| CDY22982 | Canola | cytosol | 23.92 | 25.72 |
| CDX99248 | Canola | cytosol | 23.92 | 25.57 |
| CDY58259 | Canola | cytosol | 23.66 | 25.36 |
| CDY01300 | Canola | cytosol | 13.71 | 22.77 |
| CDY51562 | Canola | cytosol | 20.43 | 21.17 |
| CDY58793 | Canola | cytosol | 20.16 | 20.89 |
| CDY17172 | Canola | cytosol | 8.06 | 20.83 |
| CDX81755 | Canola | cytosol | 21.24 | 20.26 |
| CDY30645 | Canola | nucleus | 12.1 | 20.18 |
| CDY35074 | Canola | cytosol | 11.29 | 20.1 |
| CDY00415 | Canola | mitochondrion | 11.56 | 20.09 |
| CDY26117 | Canola | cytosol | 23.12 | 19.77 |
| CDY04697 | Canola | cytosol | 11.83 | 19.73 |
| CDY33062 | Canola | mitochondrion, plastid | 22.85 | 19.54 |
| CDY08233 | Canola | mitochondrion | 22.85 | 19.54 |
| CDY10574 | Canola | cytosol | 22.58 | 19.31 |
| CDY24045 | Canola | mitochondrion | 22.58 | 19.31 |
| CDY01301 | Canola | cytosol | 8.06 | 19.11 |
| CDY02451 | Canola | cytosol | 22.31 | 19.08 |
| CDY12647 | Canola | cytosol | 18.55 | 19.06 |
| CDX80156 | Canola | cytosol | 19.35 | 19.0 |
| CDY31534 | Canola | cytosol | 19.09 | 18.93 |
| CDY66857 | Canola | cytosol | 18.01 | 18.82 |
| CDX96091 | Canola | cytosol | 18.55 | 18.5 |
| CDY70379 | Canola | cytosol | 7.8 | 18.35 |
| CDX90085 | Canola | plastid | 16.94 | 18.26 |
| CDX96822 | Canola | extracellular, vacuole | 20.97 | 18.06 |
| CDY11811 | Canola | plastid | 16.67 | 17.97 |
| CDY01812 | Canola | cytosol | 18.01 | 17.96 |
| CDY36145 | Canola | cytosol | 16.67 | 17.71 |
| CDY33754 | Canola | nucleus | 11.83 | 17.6 |
| CDY70128 | Canola | cytosol | 15.86 | 17.51 |
| CDY15708 | Canola | cytosol | 16.13 | 17.49 |
| CDY03923 | Canola | cytosol | 15.86 | 17.46 |
| CDY64883 | Canola | golgi, plastid | 19.09 | 17.27 |
| CDY64382 | Canola | plastid | 15.86 | 17.25 |
| CDY52247 | Canola | cytosol | 14.78 | 17.19 |
| CDY52764 | Canola | cytosol | 18.82 | 16.47 |
| CDY46430 | Canola | cytosol | 18.82 | 16.43 |
| CDX81631 | Canola | nucleus | 18.01 | 16.38 |
| CDY62015 | Canola | nucleus | 18.01 | 16.14 |
| CDY33348 | Canola | cytosol | 7.8 | 16.11 |
| CDY54825 | Canola | cytosol | 8.33 | 16.06 |
| CDY49094 | Canola | nucleus | 18.28 | 16.04 |
| CDY16205 | Canola | nucleus | 18.01 | 15.84 |
| CDY60836 | Canola | cytosol | 15.86 | 15.53 |
| CDX96551 | Canola | cytosol | 16.94 | 15.52 |
| CDX82682 | Canola | cytosol | 12.9 | 15.34 |
| CDY15707 | Canola | cytosol, plastid | 14.25 | 15.01 |
| CDY17425 | Canola | cytosol | 16.13 | 14.96 |
| CDX73096 | Canola | cytosol | 16.13 | 14.96 |
| CDY49979 | Canola | cytosol | 16.13 | 14.71 |
| CDX68177 | Canola | cytosol | 16.4 | 14.63 |
| CDY62176 | Canola | nucleus | 17.47 | 14.54 |
| CDY09349 | Canola | nucleus | 17.2 | 14.41 |
| CDY65956 | Canola | cytosol | 7.26 | 14.36 |
| CDY28493 | Canola | cytosol | 15.86 | 14.36 |
| CDX85842 | Canola | cytosol | 16.4 | 14.29 |
| CDY03028 | Canola | cytosol | 17.2 | 14.25 |
| CDY45190 | Canola | nucleus | 17.2 | 14.13 |
| CDY34175 | Canola | cytosol | 15.59 | 14.11 |
| CDY13683 | Canola | cytosol | 16.13 | 13.86 |
| CDX90239 | Canola | cytosol | 14.52 | 13.6 |
| CDY52395 | Canola | cytosol | 15.59 | 13.39 |
| CDY64780 | Canola | cytosol | 15.32 | 13.13 |
| CDY35075 | Canola | cytosol | 6.45 | 13.04 |
| CDY36146 | Canola | cytosol | 13.98 | 12.47 |
| CDY69929 | Canola | cytosol | 13.98 | 12.47 |
| CDY63005 | Canola | cytosol | 13.98 | 12.47 |
| CDY33755 | Canola | cytosol | 4.03 | 12.2 |
| CDY12345 | Canola | cytosol | 14.52 | 11.87 |
| CDY03921 | Canola | cytosol, extracellular, plasma membrane | 11.02 | 11.61 |
| CDY66938 | Canola | cytosol, mitochondrion | 5.11 | 10.8 |
| CDY49977 | Canola | cytosol | 13.44 | 10.64 |
| CDY53460 | Canola | cytosol | 4.84 | 10.23 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | UniProt:A0A078H8D1 | EnsemblPlants:CDY34765 | ProteinID:CDY34765 | ProteinID:CDY34765.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00057307001 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF31 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 |
| UniParc:UPI0004EEA034 | SEG:seg | : | : | : | : |
Description
BnaA09g41320DBnaA09g41320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8D1]
Coordinates
chrLK032341:-:160255..161373
Molecular Weight (calculated)
41193.7 Da
IEP (calculated)
5.678
GRAVY (calculated)
-0.273
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MTETQTSIDQ QEEEEETRTK TQPLIPGLPN EIAELCLLRL PYPYHALLRS VSSSWNTTIT SPSFLHSKQS LSISSPYLFV FSFNKSTAKV QWQSLDLSSG
101: RWFVLPPMPS SFAKISSPHA LSCASIPRQG KLFVLGGGES SRSAVVYTAL TNRWSLASPM LSPRTYFVSG NLNGKITAVG GSLDAGGEAT KDVESYDPES
201: DTWKESARLP MVMAKYDSAV IGKEMLVTEG WAWPFMFPPM GHVYDSDEDT WREMSGGMKE GWTGVSVVVR GRLFVISEHG DFPMKVYSSD DDTWRYVSGE
301: KLPGKTMRRP FAVAGVEDRV FVVGEGLNVA EGRVNEGQNG EFSVEWRMIA FTSSSHQART QFSPASCHVL YV
101: RWFVLPPMPS SFAKISSPHA LSCASIPRQG KLFVLGGGES SRSAVVYTAL TNRWSLASPM LSPRTYFVSG NLNGKITAVG GSLDAGGEAT KDVESYDPES
201: DTWKESARLP MVMAKYDSAV IGKEMLVTEG WAWPFMFPPM GHVYDSDEDT WREMSGGMKE GWTGVSVVVR GRLFVISEHG DFPMKVYSSD DDTWRYVSGE
301: KLPGKTMRRP FAVAGVEDRV FVVGEGLNVA EGRVNEGQNG EFSVEWRMIA FTSSSHQART QFSPASCHVL YV
001: MAEQETTSNI NTINDQAEEE TRTKSQPLIS GLPNDIAELC LLRLPYPYHA LYRSVSSSWN KTITNPRFLF SKQSLSISSP YLFVFAFNKS TARIQWQSLD
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV
Arabidopsis Description
AFRF-box protein AFR [Source:UniProtKB/Swiss-Prot;Acc:Q8LAW2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.