CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24540.1	KRG89812	AT2G41090.1	17360592
AT2G24540.1	KRG94975	AT2G41090.1	17360592
AT2G24540.1	KRH18664	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52601	Soybean	extracellular, golgi	78.35	68.92
VIT_04s0008g02380.t01	Wine grape	cytosol, peroxisome, plastid	47.01	44.59
CDX76807	Canola	cytosol	45.58	43.36
Bra007843.1-P	Field mustard	cytosol	44.73	42.2
CDY34765	Canola	cytosol	44.44	41.94
AT2G24540.1	Thale cress	cytosol	43.59	41.13
TraesCS5A01G544300.1	Wheat	extracellular, plasma membrane	32.48	39.86
GSMUA_AchrUn_...	Banana	cytosol	39.89	39.22
TraesCS7D01G483900.1	Wheat	cytosol	38.46	35.25
Os06t0655500-01	Rice	cytosol	38.46	35.16
TraesCS7A01G496600.1	Wheat	cytosol	38.18	34.81
EER90147	Sorghum	cytosol	38.18	34.1
Zm00001d046922_P001	Maize	cytosol	37.04	33.77
Zm00001d046921_P001	Maize	cytosol	37.89	33.76
KRH11179	Soybean	mitochondrion, plastid	32.76	28.4
KRH21075	Soybean	mitochondrion	32.76	28.4
KRH72270	Soybean	cytosol	8.55	22.9
KRH32035	Soybean	cytosol	21.65	22.09
KRH67237	Soybean	cytosol	21.37	21.74
KRG95556	Soybean	cytosol	21.37	21.74
KRH71403	Soybean	cytosol	21.08	21.51
KRH62415	Soybean	cytosol	15.67	19.93
KRH48153	Soybean	cytosol	19.37	18.78
KRH11716	Soybean	cytosol, golgi, plastid	19.66	18.55
KRG93237	Soybean	cytosol	22.22	18.22
KRH56558	Soybean	cytosol	21.94	17.99
KRH48154	Soybean	cytosol	18.8	17.93
KRG97442	Soybean	cytosol, nucleus, peroxisome	18.8	17.84
KRH42654	Soybean	cytosol	19.66	17.78
KRH18847	Soybean	cytosol	23.93	17.68
KRH48156	Soybean	cytosol	18.23	17.68
KRH42190	Soybean	cytosol, plastid	24.22	17.67
KRH53131	Soybean	cytosol	23.93	17.65
KRH58301	Soybean	cytosol	23.93	17.46
KRH31463	Soybean	cytosol	19.09	17.4
KRG93186	Soybean	cytosol	19.66	17.34
KRH16647	Soybean	cytosol, plastid	23.36	17.19
KRH65051	Soybean	cytosol	15.95	17.07
KRH55297	Soybean	cytosol	13.96	16.72
KRH65052	Soybean	cytosol	14.81	16.25
KRH58897	Soybean	cytosol	20.23	16.25
KRH42810	Soybean	cytosol	20.23	16.25
KRH26429	Soybean	cytosol	16.52	15.93
KRH22905	Soybean	cytosol	16.52	14.91
KRH36711	Soybean	cytosol	17.09	14.89
KRH24879	Soybean	cytosol	16.81	14.86
KRH29930	Soybean	cytosol	14.24	14.41
KRH03453	Soybean	cytosol	16.52	14.22
KRH12864	Soybean	cytosol, plasma membrane	13.11	14.15
KRH56929	Soybean	cytosol	16.24	14.0
KRH57678	Soybean	cytosol	15.38	13.71
KRH63378	Soybean	cytosol	16.52	13.15
KRH54527	Soybean	cytosol	16.52	13.15
KRG94518	Soybean	mitochondrion	13.11	11.47
KRH06951	Soybean	cytosol	12.82	11.14
KRH74828	Soybean	cytosol	16.52	10.8
KRH70694	Soybean	cytosol	16.52	10.76
KRG99114	Soybean	cytosol	16.52	10.76
KRH45883	Soybean	cytosol	16.24	10.58

Protein Annotations

EMBL:ACUP02002201	EnsemblPlants:KRH61941	EnsemblPlantsGene:GLYMA_04G075700	EntrezGene:102668990	Gene3D:2.120.10.80	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414	PANTHER:PTHR24414:SF31
ProteinID:KRH61941	ProteinID:KRH61941.1	SEG:seg	SUPFAM:SSF117281	UniParc:UPI00023C0554	UniProt:I1JUM8
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:6337219..6338901

Molecular Weight (calculated)

38836.2 Da

IEP (calculated)

9.412

GRAVY (calculated)

-0.272

Length

351 amino acids

Sequence
(BLAST)

001: MAGCGRRKGA GGAYSWLTLR NCRAVSSSRS VPLPSFVALC SSTWNRAITH PSFIFSKKTL SRPHLFVLAF HSQTGKIQWQ ALDPSSGRWF VLPQMPLQEN
101: SCPTEFACAA LPHQGKLFVM AGGGGGSDTL VYRAATNQWA LAAPMPGGRK RGFFAAEGVE GKIVAVGRSG TDIYDPESDT WREGKKQGGE LKRYEVVAAG
201: GKVYVSEGWW WPFMYRPRGW VYETEKDTWR EMGVGMRDGW SGVSVAVGGR VFVIAEYGDA PVRVYDEEQD TWRYVKGGSF PRDVIKRPFL ATGLDNRIYV
301: ASYNLNVAIG KMKSDRIQGK GDFEVSVTWE VVEAPSAFRE FSPCTCQVLY A

Best Arabidopsis Sequence Match ( AT2G24540.1 )
(BLAST)

001: MAEQETTSNI NTINDQAEEE TRTKSQPLIS GLPNDIAELC LLRLPYPYHA LYRSVSSSWN KTITNPRFLF SKQSLSISSP YLFVFAFNKS TARIQWQSLD
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV

Arabidopsis Description

AFRF-box protein AFR [Source:UniProtKB/Swiss-Prot;Acc:Q8LAW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.