Factsheet for Bra007843.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P
Bra018296.1-P
Bra033467.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24540.1	Bra003735.1-P	AT1G75950.1	12795696
AT2G24540.1	Bra008231.1-P	AT1G75950.1	12795696
AT2G24540.1	Bra015801.1-P	AT1G75950.1	12795696
AT2G24540.1	Bra003735.1-P	AT1G75950.1	14653999
AT2G24540.1	Bra008231.1-P	AT1G75950.1	14653999
AT2G24540.1	Bra015801.1-P	AT1G75950.1	14653999
AT2G24540.1	Bra003735.1-P	AT1G75950.1	21798944
AT2G24540.1	Bra008231.1-P	AT1G75950.1	21798944
AT2G24540.1	Bra015801.1-P	AT1G75950.1	21798944
AT2G24540.1	Bra000214.1-P	AT2G41090.1	17360592
AT2G24540.1	Bra018296.1-P	AT3G51920.1	17360592
AT2G24540.1	Bra033467.1-P	AT3G51920.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34765	Canola	cytosol	99.19	99.19
AT2G24540.1	Thale cress	cytosol	80.91	80.91
VIT_04s0008g02380.t01	Wine grape	cytosol, peroxisome, plastid	53.49	53.78
GSMUA_AchrUn_...	Banana	cytosol	43.82	45.66
KRH61941	Soybean	plastid	42.2	44.73
KRH52601	Soybean	extracellular, golgi	47.85	44.61
Zm00001d046921_P001	Maize	cytosol	39.25	37.06
TraesCS7D01G483900.1	Wheat	cytosol	37.9	36.81
Os06t0655500-01	Rice	cytosol	37.63	36.46
EER90147	Sorghum	cytosol	38.44	36.39
Zm00001d046922_P001	Maize	cytosol	37.37	36.1
TraesCS7A01G496600.1	Wheat	cytosol	37.37	36.1
TraesCS5A01G544300.1	Wheat	extracellular, plasma membrane	26.88	34.97
Bra032358.1-P	Field mustard	mitochondrion, plastid	36.56	34.17
Bra001739.1-P	Field mustard	cytosol	24.19	26.01
Bra037535.1-P	Field mustard	cytosol	23.92	25.65
Bra003447.1-P	Field mustard	cytosol	20.43	21.17
Bra005497.1-P	Field mustard	cytosol	8.06	20.83
Bra012304.1-P	Field mustard	cytosol	26.08	20.77
Bra026073.1-P	Field mustard	cytosol	11.29	20.29
Bra011908.1-P	Field mustard	mitochondrion	22.85	19.54
Bra033998.1-P	Field mustard	cytosol	18.82	19.34
Bra037989.1-P	Field mustard	cytosol, plastid	22.58	19.31
Bra002471.1-P	Field mustard	cytosol	19.09	18.93
Bra031360.1-P	Field mustard	plastid	12.37	18.85
Bra030872.1-P	Field mustard	cytosol	21.77	18.62
Bra004227.1-P	Field mustard	cytosol	18.55	18.5
Bra010942.1-P	Field mustard	plastid	16.94	18.26
Bra008155.1-P	Field mustard	cytosol	14.25	17.85
Bra026838.1-P	Field mustard	nucleus	18.01	16.46
Bra016297.1-P	Field mustard	cytosol	18.55	16.2
Bra015905.1-P	Field mustard	cytosol	17.2	15.53
Bra030046.1-P	Field mustard	cytosol, plastid	14.25	15.01
Bra026575.1-P	Field mustard	nucleus	17.2	14.41
Bra032983.1-P	Field mustard	cytosol	15.86	14.36
Bra017407.1-P	Field mustard	nucleus, plastid	16.94	14.35
Bra024801.1-P	Field mustard	nucleus	17.47	14.35
Bra003796.1-P	Field mustard	cytosol	16.4	14.29
Bra025251.1-P	Field mustard	cytosol	16.13	13.86
Bra010784.1-P	Field mustard	cytosol	14.25	13.35
Bra034944.1-P	Field mustard	cytosol	13.98	12.71
Bra030045.1-P	Field mustard	cytosol	13.98	11.04
Bra032052.1-P	Field mustard	cytosol	5.11	10.8

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra007843	EnsemblPlants:Bra007843.1	EnsemblPlants:Bra007843.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0010017
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4CUE8	PFAM:PF00646
PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF31	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI0002542D70	SEG:seg	:	:	:

Description

AT2G24540 (E=2e-172) AFR | AFR (ATTENUATED FAR-RED RESPONSE)

Coordinates

chrA09:-:31211634..31212752

Molecular Weight (calculated)

41195.6 Da

IEP (calculated)

5.678

GRAVY (calculated)

-0.286

Length

372 amino acids

Sequence
(BLAST)

001: MTETQTSIDQ QEEEEETRTK TQPLIPGLPN EIAELCLLRL PYPYHALLRS VSSSWNTTIT SPSFLHSKQS LSISSPYLFV FSFNKSTAKV QWQSLDLSSG
101: RWFVLPPMPS SFAKISSPHA LSCASIPRQG KLFVLGGGES SRSAVVYTAL TNRWSLASPM LSPRTYFVSG NLNGKITAVG GSLDGGGEAT KDVESYDPES
201: DTWKESARLP MVMAKYDSAV IGKEMLVTEG WAWPFMFPPM GHVYDSDEDT WREMSGGMKE GWTGVSVVVR GRLFVISEHG DFPMKVYSSD DDTWRYVSGE
301: KLPGKTMRRP FAVAGVEDRV FVVGEGLNVA EGRVNEGQNG EFSVEWRMVT FTSSSHQART QFSPASCHVL YV

Best Arabidopsis Sequence Match ( AT2G24540.1 )
(BLAST)

001: MAEQETTSNI NTINDQAEEE TRTKSQPLIS GLPNDIAELC LLRLPYPYHA LYRSVSSSWN KTITNPRFLF SKQSLSISSP YLFVFAFNKS TARIQWQSLD
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV

Arabidopsis Description

AFRF-box protein AFR [Source:UniProtKB/Swiss-Prot;Acc:Q8LAW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.