Factsheet for Bra026073.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35074	Canola	cytosol	97.58	96.65
Bra005497.1-P	Field mustard	cytosol	53.62	77.08
Solyc07g042960.1.1	Tomato	cytosol, mitochondrion	39.13	46.02
AT1G16250.2	Thale cress	cytosol	65.7	35.51
GSMUA_Achr2P18470_001	Banana	cytosol	46.86	22.77
CDY33348	Canola	cytosol	14.01	16.11
Bra001739.1-P	Field mustard	cytosol	25.6	15.32
Bra037535.1-P	Field mustard	cytosol	25.12	14.99
Bra033998.1-P	Field mustard	cytosol	24.15	13.81
Bra004227.1-P	Field mustard	cytosol	23.19	12.87
Bra032358.1-P	Field mustard	mitochondrion, plastid	24.15	12.56
Bra010942.1-P	Field mustard	plastid	20.29	12.17
Bra030046.1-P	Field mustard	cytosol, plastid	20.29	11.9
Bra003447.1-P	Field mustard	cytosol	19.81	11.42
Bra007843.1-P	Field mustard	cytosol	20.29	11.29
Bra037989.1-P	Field mustard	cytosol, plastid	23.19	11.03
Bra011908.1-P	Field mustard	mitochondrion	22.71	10.8
Bra012304.1-P	Field mustard	cytosol	24.15	10.71
Bra031360.1-P	Field mustard	plastid	12.56	10.66
Bra030872.1-P	Field mustard	cytosol	22.22	10.57
Bra002471.1-P	Field mustard	cytosol	18.84	10.4
Bra016297.1-P	Field mustard	cytosol	19.81	9.62
Bra026838.1-P	Field mustard	nucleus	18.36	9.34
Bra024801.1-P	Field mustard	nucleus	20.29	9.27
Bra026575.1-P	Field mustard	nucleus	19.32	9.01
Bra008155.1-P	Field mustard	cytosol	12.56	8.75
Bra017407.1-P	Field mustard	nucleus, plastid	18.36	8.66
Bra010784.1-P	Field mustard	cytosol	16.43	8.56
Bra015905.1-P	Field mustard	cytosol	16.43	8.25
Bra025251.1-P	Field mustard	cytosol	16.91	8.08
Bra030045.1-P	Field mustard	cytosol	18.36	8.07
Bra032983.1-P	Field mustard	cytosol	15.94	8.03
Bra003796.1-P	Field mustard	cytosol	15.94	7.73
Bra034944.1-P	Field mustard	cytosol	14.49	7.33
Bra032052.1-P	Field mustard	cytosol	0.0	0.0
CDY35075	Canola	cytosol	0.0	0.0
Solyc07g042950.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra026073	EnsemblPlants:Bra026073.1	EnsemblPlants:Bra026073.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4EBB4	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414
PANTHER:PTHR24414:SF41	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000253F187	:

Description

AT1G16250 (E=5e-078) | kelch repeat-containing F-box family protein

Coordinates

chrA06:+:6243797..6244667

Molecular Weight (calculated)

23405.7 Da

IEP (calculated)

6.972

GRAVY (calculated)

-0.274

Length

207 amino acids

Sequence
(BLAST)

001: MWEGVNNYFT EVNKFEQGDR SESVDILKSQ ARIMGTIEQS IIPGLPDDLA LRCISKLSHA YHGKLECVSK DWRDLVRCEA YSCYKARNGW SESWLFAHSN
101: NQLVAYDPDA DRWHPLPRNE AIQDGWDHSG FACVCVSSCL LVIGGCYVSS FPREEPFVVT NVVMRFDPFK KEWKMVAGMR TPRTRFACAA VSGKVYVAGG
201: FNLTQSS

Best Arabidopsis Sequence Match ( AT1G16250.2 )
(BLAST)

001: MESIEQSIIP GLPDDLALRC IAKLSHGYHG VLECVSRGWR DLVRGADYSC YKARNGWSGS WLFVLTERSK NQWVAYDPEA DRWHPLPRTR AVQDGWHHSG
101: FACVCVSNCL LVIGGCYAPS VSSFPHQKPV VTKDVMRFDP FKKQWKMVAS MRTPRTHFAC TSVSGKVYVA GGRNLTHSRG IPSAEVYDPV ADRWEELPAM
201: PRPQMDCSGL SYRGCFHVLS DQVGFAEQNS SEVFNPRDMT WSTVEDVWPF SRAMQFAVQV MKNDRVYTIV DWGESLIKTR DTDEGEWYNV GSVPSVVLPN
301: HPRELEAFGY GFAALRNELY VIGGKVLKWE ESGAGRFDIV RLPVVRVCNP LDRPLNWRET KPMCIPAGGS IIGCVSLEES SPP

Arabidopsis Description

F-box/kelch-repeat protein At1g16250 [Source:UniProtKB/Swiss-Prot;Acc:Q0WW40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.