Factsheet for Bra010784.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90239	Canola	cytosol	99.75	99.75
Bra032052.1-P	Field mustard	cytosol	24.69	55.68
Bra034944.1-P	Field mustard	cytosol	56.17	54.52
Bra032983.1-P	Field mustard	cytosol	53.4	51.58
AT5G40680.1	Thale cress	mitochondrion	53.65	51.33
Bra025251.1-P	Field mustard	cytosol	50.63	46.42
KRH57678	Soybean	cytosol	42.32	42.64
PGSC0003DMT400021985	Potato	nucleus	42.32	40.29
KRH06951	Soybean	cytosol	40.55	39.85
KRG94518	Soybean	mitochondrion	40.05	39.65
VIT_14s0068g02150.t01	Wine grape	cytosol	44.33	36.9
Bra008155.1-P	Field mustard	cytosol	23.17	30.98
Solyc07g009410.2.1	Tomato	cytosol	32.49	28.92
Bra002471.1-P	Field mustard	cytosol	27.2	28.8
Bra015905.1-P	Field mustard	cytosol	27.96	26.94
Bra026838.1-P	Field mustard	nucleus	26.95	26.29
Bra017407.1-P	Field mustard	nucleus, plastid	28.72	25.97
Bra026575.1-P	Field mustard	nucleus	28.97	25.9
Bra016297.1-P	Field mustard	cytosol	27.71	25.82
Bra003796.1-P	Field mustard	cytosol	27.71	25.76
Bra024801.1-P	Field mustard	nucleus	27.71	24.28
Bra037535.1-P	Field mustard	cytosol	17.13	19.6
Bra001739.1-P	Field mustard	cytosol	16.62	19.08
Bra011908.1-P	Field mustard	mitochondrion	19.14	17.47
Bra030872.1-P	Field mustard	cytosol	18.14	16.55
Bra026073.1-P	Field mustard	cytosol	8.56	16.43
Bra031360.1-P	Field mustard	plastid	10.08	16.39
Bra033998.1-P	Field mustard	cytosol	14.86	16.3
Bra037989.1-P	Field mustard	cytosol, plastid	17.63	16.09
Bra004227.1-P	Field mustard	cytosol	15.11	16.09
Bra010942.1-P	Field mustard	plastid	13.85	15.94
Bra012304.1-P	Field mustard	cytosol	18.64	15.85
Bra032358.1-P	Field mustard	mitochondrion, plastid	15.87	15.83
Bra007843.1-P	Field mustard	cytosol	13.35	14.25
Bra003447.1-P	Field mustard	cytosol	12.85	14.21
Bra005497.1-P	Field mustard	cytosol	4.79	13.19
Bra030046.1-P	Field mustard	cytosol, plastid	10.08	11.33
Bra030045.1-P	Field mustard	cytosol	13.35	11.25

Protein Annotations

EnsemblPlants:Bra010784.1	EnsemblPlants:Bra010784.1-P	EnsemblPlantsGene:Bra010784	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF160
PFAM:PF01344	SEG:seg	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI0002546F18	UniProt:M4D2T1
MapMan:35.1	:	:	:	:	:

Description

AT5G40680 (E=3e-118) | kelch repeat-containing F-box family protein

Coordinates

chrA08:-:16432807..16434000

Molecular Weight (calculated)

45244.5 Da

IEP (calculated)

7.402

GRAVY (calculated)

-0.197

Length

397 amino acids

Sequence
(BLAST)

001: MILIVGTIPI ILDMYDDSSS ASEGEEIGET KEIAQSLACL TSQNAYHVAP QLLYELQVEI FARVPCPEYW KLQFLNKQFS QLLKSSEIFR TRRELGLVKP
101: YFFMLSRSDR RWTMYDEDFK TSQRLPKLSS GVSFFSGDKE TTCVGTQLIV IWRSEEGIRV WRYELAMHKW FKGPEMITPR VMFASASHGT NAFFAGGFTI
201: SKNGVEVVSI VEKYNTETKT WASIPPMHRR RKLCSGCFLR GKFYVIGGQN ENDENLTCAE SYDEETNSWE LIPNMLADMS LSISQAPPRI AVVNDTLYLL
301: DTSLNELRVY NVNTNTSKKL GTIPVMAHVT KGWGVVFKSV KDNLMLIGAS FNRLHSRKRG IYKSCPSPDM EEIHWEEICC RGGSLNHYIL NCCVMLA

Best Arabidopsis Sequence Match ( AT5G40680.1 )
(BLAST)

001: MSLMLQKNQA RGTRASLSQF EPRKLLIAST KPTIPDLNAE PCSDSEEEET VENLTSLAPQ DAHNGLPKLM FDLEVEIFSR LSCFQYWKLN LLNKQFSQLL
101: QSREIFKVRR ERGLVQPYVL MFSSGETCWV MFDKGFKNFR QLPEIPSDFC FFYGDKETIT AGTHLIVIGR EEKRIVVWRY ELEVNKWIND TEMITPRVMY
201: ASASRGTDAF FAGGIKTSEN GGPDVVNVAE RYNSDTKTWK AMKAMHKRRK FSSGCFLRGK FYALGGRDEN DVYLTCGESY DELTDSWKLI PDMLKGMTFM
301: NPQSPPLIAV VKDNLYLLET WLNELWVYDI NANVWKNLGV VPVKANAALG WGVAFKSVGD RILVIGASVT KSWDNKMSVY TCCPFPKVEK ITWEETSCDC
401: VQLGHFIRNC CVMLA

Arabidopsis Description

Galactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FM30]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.