Factsheet for Bra037535.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18573	Canola	cytosol	97.98	97.7
CDY58259	Canola	cytosol	95.97	95.97
Bra001739.1-P	Field mustard	cytosol	87.61	87.86
AT3G63220.2	Thale cress	cytosol	82.13	80.97
Solyc09g065400.1.1	Tomato	cytosol	69.74	70.14
PGSC0003DMT400049746	Potato	cytosol	69.45	69.86
VIT_07s0151g00770.t01	Wine grape	cytosol	69.16	69.57
KRH67237	Soybean	cytosol	68.01	68.41
KRH71403	Soybean	cytosol	67.44	68.02
KRH32035	Soybean	cytosol	67.44	68.02
KRG95556	Soybean	cytosol	67.15	67.54
Solyc06g008690.1.1	Tomato	cytosol	63.11	63.48
PGSC0003DMT400013635	Potato	cytosol	62.82	63.19
GSMUA_Achr6P24370_001	Banana	cytosol	57.35	57.35
OQU82118	Sorghum	cytosol	56.48	56.32
Os10t0388200-01	Rice	cytosol	55.91	55.91
Zm00001d014338_P001	Maize	cytosol	55.91	55.75
TraesCS6D01G195800.1	Wheat	cytosol	56.48	55.52
TraesCS6B01G243200.1	Wheat	cytosol	56.48	55.52
TraesCS7B01G234000.1	Wheat	cytosol	52.74	55.12
TraesCS6A01G211500.1	Wheat	extracellular, golgi	44.96	50.65
Bra026073.1-P	Field mustard	cytosol	14.99	25.12
Bra007843.1-P	Field mustard	cytosol	25.65	23.92
Bra003447.1-P	Field mustard	cytosol	23.34	22.56
Bra033998.1-P	Field mustard	cytosol	23.34	22.38
Bra005497.1-P	Field mustard	cytosol	9.22	22.22
Bra002471.1-P	Field mustard	cytosol	23.63	21.87
Bra004227.1-P	Field mustard	cytosol	21.9	20.38
Bra012304.1-P	Field mustard	cytosol	27.09	20.13
Bra032358.1-P	Field mustard	mitochondrion, plastid	22.77	19.85
Bra037989.1-P	Field mustard	cytosol, plastid	24.5	19.54
Bra010942.1-P	Field mustard	plastid	18.73	18.84
Bra008155.1-P	Field mustard	cytosol	15.85	18.52
Bra030872.1-P	Field mustard	cytosol	23.05	18.39
Bra015905.1-P	Field mustard	cytosol	21.61	18.2
Bra011908.1-P	Field mustard	mitochondrion	22.77	18.16
Bra003796.1-P	Field mustard	cytosol	21.9	17.8
Bra010784.1-P	Field mustard	cytosol	19.6	17.13
Bra016297.1-P	Field mustard	cytosol	20.75	16.9
Bra026838.1-P	Field mustard	nucleus	19.31	16.46
Bra031360.1-P	Field mustard	plastid	11.53	16.39
Bra032983.1-P	Field mustard	cytosol	19.02	16.06
Bra026575.1-P	Field mustard	nucleus	19.6	15.32
HORVU6Hr1G007080.1	Barley	cytosol	3.75	14.94
Bra017407.1-P	Field mustard	nucleus, plastid	18.73	14.81
Bra025251.1-P	Field mustard	cytosol	18.44	14.78
Bra030046.1-P	Field mustard	cytosol, plastid	14.99	14.73
Bra024801.1-P	Field mustard	nucleus	19.02	14.57
Bra034944.1-P	Field mustard	cytosol	17.0	14.43
Bra032052.1-P	Field mustard	cytosol	6.63	13.07
Bra030045.1-P	Field mustard	cytosol	17.0	12.53

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra037535	EnsemblPlants:Bra037535.1	EnsemblPlants:Bra037535.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4F8X3	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414
PANTHER:PTHR24414:SF29	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002544CAF

Description

AT3G63220 (E=2e-171) | kelch repeat-containing F-box family protein

Coordinates

chrA01:-:21708261..21709304

Molecular Weight (calculated)

38276.1 Da

IEP (calculated)

6.634

GRAVY (calculated)

0.036

Length

347 amino acids

Sequence
(BLAST)

001: MSSSLLEGIP EAVALRCLAH VPLHHHPNLE LVSRSWRAAI RSRELFRVRN ELKSSESLLC VCSFDPENTW QVYSPDCDRW LTLPLLPSPI RHLAHFGAVT
101: TSGKLFVLGG GSDAVDPLTG DHDGTFATDE VWCYDFVERR WSQRASMLVP RSMFACCVLD GKIVVAGGFT TCRKSVSGAE MYDLENDVWS TIPDLNRTHN
201: SPCSGLVIRG RVHVLHKGLS TVQVLESVKV GWEVKEYGWP QGSMAVVEGV VYVLSHGVVY KQEEDETSWK VVASASEFKL RIGMAMTSLS GEVLLVGGVI
301: GPDRHWDIKP LSDVDVLTVG SDRPVWRKVA PMTKCCGTVL GCTQLII

Best Arabidopsis Sequence Match ( AT3G63220.1 )
(BLAST)

001: MSGLLDGIPE AVALRCLAHV PLHLHPNLEL VSRSWRAAIR SHELFRVRKE LRSSEHLLCV CAFDPENIWQ VYSPNCDRWL TLPLLPSRIR HLAHFGAVTT
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI

Arabidopsis Description

SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.