Factsheet for Zm00001d014338_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82118	Sorghum	cytosol	98.28	98.28
Os10t0388200-01	Rice	cytosol	90.23	90.49
TraesCS7B01G234000.1	Wheat	cytosol	83.62	87.65
TraesCS6D01G195800.1	Wheat	cytosol	88.22	86.97
TraesCS6B01G243200.1	Wheat	cytosol	87.93	86.69
TraesCS6A01G211500.1	Wheat	extracellular, golgi	68.39	77.27
GSMUA_Achr6P24370_001	Banana	cytosol	77.01	77.23
PGSC0003DMT400049746	Potato	cytosol	62.93	63.48
Solyc09g065400.1.1	Tomato	cytosol	62.93	63.48
VIT_07s0151g00770.t01	Wine grape	cytosol	62.64	63.19
KRH67237	Soybean	cytosol	61.49	62.03
KRH32035	Soybean	cytosol	61.21	61.92
KRH71403	Soybean	cytosol	61.21	61.92
KRG95556	Soybean	cytosol	60.63	61.16
Solyc06g008690.1.1	Tomato	cytosol	59.77	60.29
PGSC0003DMT400013635	Potato	cytosol	59.2	59.71
CDY22982	Canola	cytosol	57.76	58.09
Bra001739.1-P	Field mustard	cytosol	57.47	57.8
CDX82306	Canola	cytosol	57.47	57.8
CDX99248	Canola	cytosol	56.03	56.03
AT3G63220.2	Thale cress	cytosol	56.61	55.97
Bra037535.1-P	Field mustard	cytosol	55.75	55.91
CDY58259	Canola	cytosol	54.89	55.04
CDY18573	Canola	cytosol	54.89	54.89
Zm00001d016553_P001	Maize	cytosol	25.57	24.45
Zm00001d014986_P001	Maize	cytosol	22.41	21.49
Zm00001d018813_P001	Maize	mitochondrion	25.0	21.22
Zm00001d049632_P001	Maize	cytosol	28.45	20.67
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	26.72	20.39
Zm00001d046922_P001	Maize	cytosol	22.41	20.26
Zm00001d046921_P001	Maize	cytosol	22.41	19.8
Zm00001d052253_P001	Maize	cytosol	22.7	18.68
Zm00001d027856_P001	Maize	cytosol	22.99	18.65
Zm00001d048898_P001	Maize	cytosol	22.99	18.39
Zm00001d007596_P001	Maize	nucleus, plastid	23.28	18.37
Zm00001d015744_P001	Maize	plastid	21.84	18.18
Zm00001d032991_P001	Maize	cytosol	22.7	18.08
Zm00001d048310_P001	Maize	cytosol	21.84	17.76
HORVU6Hr1G007080.1	Barley	cytosol	4.31	17.24
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	21.84	17.16
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	21.55	17.08
Zm00001d033012_P001	Maize	cytosol	21.55	16.82
Zm00001d026321_P001	Maize	cytosol	20.98	16.29
Zm00001d002284_P003	Maize	mitochondrion	21.26	15.16
Zm00001d007538_P001	Maize	cytosol	10.63	12.46
Zm00001d019862_P001	Maize	cytosol	19.83	10.09

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A1D6GSB0	ProteinID:AQK65936.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF29	SMART:SM00256
SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0008441ABB	EnsemblPlantsGene:Zm00001d014338	EnsemblPlants:Zm00001d014338_P001
EnsemblPlants:Zm00001d014338_T001	:	:	:	:	:

Description

F-box/kelch-repeat protein SKIP30

Coordinates

chr5:-:41448867..41449913

Molecular Weight (calculated)

38302.7 Da

IEP (calculated)

7.114

GRAVY (calculated)

0.078

Length

348 amino acids

Sequence
(BLAST)

001: MPSTLLDDLP NEVALQCLAR VPFLFHPTLQ LVCRSWRASV CSGELLKIRN QIGTTEELLC VLAFEPENMW QLYDPLRDKW ITLPVMPSQI RNIARFGVAS
101: VAGKLYVIGG GSDRVDPLTG DHDRIFASNE VWSYDPLHRV WSQRAPMLVA RAMFACCALD GKIIVAGGFT NCRKSISKAE IYDPEAGIWE PLPDLRLAHS
201: SACTGLVIKG KMHVLHKGLS TVQILEDGGS HWAVEDFSWL QGPMAMVGGE LYVLSNSCIM KQRGENFPDK MVSCASEFQS RIGFGMIGVG DNIYLVGGVI
301: GPGPRNQCIK LLSDVDILNV TSERPTWRPG SPMTHCRGSI CGCALLRI

Best Arabidopsis Sequence Match ( AT3G63220.2 )
(BLAST)

001: MCYRQETMSG LLDGIPEAVA LRCLAHVPLH LHPNLELVSR SWRAAIRSHE LFRVRKELRS SEHLLCVCAF DPENIWQVYS PNCDRWLTLP LLPSRIRHLA
101: HFGAVTTAGM LFVLGGGSDA VSPVTGDHDG TFATDQVWSY DFVQRQWTPR ASMLVPRAMF ACCVLQGKIV VAGGFTTCRK SISGAEMYDP ENDVWTSIPD
201: LHQTHNSACS GLVVNGKVHV LHKGLSTVQV LESVKLGWDV KDYGWPQGPM VVVEDVLYVM SHGLVFKQEG DTWKMVASAS EFKRRIGMAM TSLSDEVLIV
301: GGVIGPDRLN WDIKPLSDVD ALTVGNDRPA WRSVAPMTRC RGTILGCTQL TI

Arabidopsis Description

SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.