Factsheet for Zm00001d019862_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026321_P001	Maize	cytosol	52.92	80.8
OQU82347	Sorghum	mitochondrion	55.7	80.72
Zm00001d002284_P003	Maize	mitochondrion	56.43	79.1
Os04t0619300-01	Rice	cytosol, extracellular	51.32	73.74
TraesCS2B01G484200.1	Wheat	cytosol	48.39	73.72
TraesCS2D01G463000.1	Wheat	cytosol	47.95	73.38
HORVU2Hr1G103880.2	Barley	cytosol	47.81	73.32
TraesCS2A01G462600.1	Wheat	cytosol	48.1	73.27
VIT_16s0039g01470.t01	Wine grape	cytosol	37.87	67.45
GSMUA_Achr3P23350_001	Banana	cytosol, extracellular	38.74	65.76
Solyc11g069320.1.1	Tomato	plastid	20.76	65.14
GSMUA_Achr9P30470_001	Banana	cytosol	35.96	62.92
Zm00001d007538_P001	Maize	cytosol	25.88	59.6
KRH26429	Soybean	cytosol	31.58	59.34
KRH22905	Soybean	cytosol	32.16	56.56
PGSC0003DMT400020936	Potato	cytosol	32.02	56.44
KRH24879	Soybean	cytosol	32.31	55.67
KRH29930	Soybean	cytosol	28.22	55.62
GSMUA_Achr11P...	Banana	cytosol	35.09	54.55
KRH12864	Soybean	cytosol, plasma membrane	25.88	54.46
AT5G60570.2	Thale cress	cytosol	30.56	53.18
Bra002471.1-P	Field mustard	cytosol	28.66	52.27
CDY31534	Canola	cytosol	28.66	52.27
CDX80156	Canola	cytosol	28.95	52.24
Zm00001d052253_P001	Maize	cytosol	27.19	43.97
Zm00001d048310_P001	Maize	cytosol	26.17	41.82
Zm00001d027856_P001	Maize	cytosol	25.88	41.26
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	26.46	40.86
Zm00001d048898_P001	Maize	cytosol	25.88	40.69
Zm00001d033012_P001	Maize	cytosol	26.02	39.91
Zm00001d007596_P001	Maize	nucleus, plastid	24.56	38.1
Zm00001d016553_P001	Maize	cytosol	10.67	20.05
Zm00001d014338_P001	Maize	cytosol	10.09	19.83
Zm00001d032991_P001	Maize	cytosol	12.57	19.68
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	12.28	19.13
Zm00001d015744_P001	Maize	plastid	11.4	18.66
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	11.99	17.98
Zm00001d014986_P001	Maize	cytosol	9.21	17.36
Zm00001d049632_P001	Maize	cytosol	12.13	17.33
Zm00001d018813_P001	Maize	mitochondrion	9.5	15.85
Zm00001d046922_P001	Maize	cytosol	8.19	14.55
Zm00001d046921_P001	Maize	cytosol	8.33	14.47

Protein Annotations

Gene3D:1.25.40.10	Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A1D6I0M2	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
ProteinID:ONM53819.1	PFAM:PF01344	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24413	PANTHER:PTHR24413:SF150
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF117281	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0008434987	EnsemblPlantsGene:Zm00001d019862
EnsemblPlants:Zm00001d019862_P001	EnsemblPlants:Zm00001d019862_T001	SEG:seg	:	:	:

Description

F-box/kelch-repeat protein

Coordinates

chr7:-:71039032..71044107

Molecular Weight (calculated)

77537.3 Da

IEP (calculated)

8.318

GRAVY (calculated)

-0.306

Length

684 amino acids

Sequence
(BLAST)

001: MLKLLGQEAD SFGKRAEMND YFYGESKKHS DVFCDISELD FVPYATDLDS EELELKEQKP ITKAQSGGDS SGSRSNDCYF PGLHDDLSQD CLAWASRSNY
101: PSLSCLNKRF NLLINNGYLY RLRRKYGIVE HWVYLACSLM PWEAFDPSRK RWLRLPRMPC DECFSCADKE SLDVETQLLV LDREYTGLAI WMYNLLTRSW
201: SPCTPMNLPR CLFASGSSGE IAIVAGGCDK NGHMLRSAEL YNSEIGHLDT IPDMNLPRRL SSGFFMDGKF YVIGGVSSQR DSLTCGEEYT LETRTWRRIF
301: DMYPGGTSAS QSPPLVAVVN NQLYAADQST NVVKKYDKAN NAWNILRPLP VRADPSNGWG LAFKACGDRL LVIGGHRGPR GEVILLHSWC PEGGEDGADW
401: EVLLVKERAG VFVYNCAIMG CWGRGWQANE MARKMYVAGI KLDEITYNLI IKGFFMRGEH EMAKTVFGAM HWRGCKPNSK VYQTMVHYLC ERRDFDLAFR
501: LCKDSMEKNW FPNVDTINQL LKGLMAISKD SNGKEIMKLV TGRKPSYSDA SLARNFLRYF EPPLFQRAAS GLASARMWLN VVAAARQSRR FWRINHLLQR
601: QRLGHGMQEQ VPSRHSLSFP QSRAGQLVMK PLTECITKGP RMREPLLADI VQAEDIKELC KLLVVVSREA AKAYVGTAIV FTLI

Best Arabidopsis Sequence Match ( AT2G02870.2 )
(BLAST)

001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC

Arabidopsis Description

SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.