Factsheet for Zm00001d014986_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06149	Sorghum	cytosol	85.67	89.88
HORVU6Hr1G007030.1	Barley	cytosol	70.8	74.28
Os02t0114600-02	Rice	cytosol	73.55	74.17
TraesCS6A01G037900.1	Wheat	cytosol	71.63	71.63
TraesCS6D01G043400.1	Wheat	cytosol	71.07	67.54
TraesCS6B01G052900.2	Wheat	cytosol	69.97	66.49
GSMUA_Achr4P20790_001	Banana	extracellular	54.82	52.79
VIT_15s0046g02710.t01	Wine grape	cytosol	43.8	44.29
VIT_15s0046g02790.t01	Wine grape	cytosol	33.33	43.84
KRH48153	Soybean	cytosol	42.7	42.82
KRH48154	Soybean	cytosol	40.77	40.22
KRH48156	Soybean	cytosol	39.67	39.78
PGSC0003DMT400000478	Potato	nucleus	42.42	38.6
Solyc01g094520.2.1	Tomato	nucleus	42.15	38.35
KRH65052	Soybean	cytosol	33.06	37.5
KRH65051	Soybean	cytosol	33.61	37.2
AT3G61350.2	Thale cress	cytosol	33.33	33.8
CDY58793	Canola	cytosol	33.33	33.7
CDY51562	Canola	cytosol	33.06	33.43
Bra003447.1-P	Field mustard	cytosol	32.78	33.15
Zm00001d014338_P001	Maize	cytosol	21.49	22.41
Zm00001d016553_P001	Maize	cytosol	21.76	21.7
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	23.97	19.82
Zm00001d032991_P001	Maize	cytosol	23.42	19.45
Zm00001d015744_P001	Maize	plastid	22.31	19.38
Zm00001d018813_P001	Maize	mitochondrion	21.49	19.02
Zm00001d049632_P001	Maize	cytosol	24.79	18.79
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	22.86	18.2
Zm00001d046921_P001	Maize	cytosol	19.28	17.77
Zm00001d046922_P001	Maize	cytosol	18.73	17.66
Zm00001d048898_P001	Maize	cytosol	18.73	15.63
Zm00001d052253_P001	Maize	cytosol	18.18	15.6
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	19.01	15.58
Zm00001d033012_P001	Maize	cytosol	19.01	15.47
Zm00001d048310_P001	Maize	cytosol	18.18	15.42
Zm00001d027856_P001	Maize	cytosol	17.91	15.15
Zm00001d007596_P001	Maize	nucleus, plastid	18.18	14.97
Zm00001d026321_P001	Maize	cytosol	17.08	13.84
Zm00001d002284_P003	Maize	mitochondrion	17.08	12.7
Zm00001d007538_P001	Maize	cytosol	9.92	12.12
Zm00001d019862_P001	Maize	cytosol	17.36	9.21

Protein Annotations

EntrezGene:100501379	Gene3D:2.120.10.80	MapMan:35.1	ProteinID:AQK67832.1	ProteinID:AQK67833.1	ProteinID:AQK67834.1
ProteinID:AQK67835.1	ProteinID:AQK67836.1	ProteinID:AQK67837.1	ProteinID:AQK67838.1	ProteinID:AQK67839.1	ProteinID:AQK67840.1
EMBL:BT064707	EMBL:BT085173	EMBL:BT087954	UniProt:C0P8T8	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006950	GO:GO:0008150	GO:GO:0009409
GO:GO:0009628	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646
PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF40	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI000194B1A2	EnsemblPlantsGene:Zm00001d014986	EnsemblPlants:Zm00001d014986_P001	EnsemblPlants:Zm00001d014986_T001	SEG:seg

Description

F-box/kelch-repeat protein SKIP4

Coordinates

chr5:-:71085221..71092331

Molecular Weight (calculated)

41107.8 Da

IEP (calculated)

7.620

GRAVY (calculated)

-0.120

Length

363 amino acids

Sequence
(BLAST)

001: MINHHEIVQF GKLYNRDMES APAHTPLIHG LPDEVALICL ARVPRRYHNI LRRVSRRWRA LLCSEEWHLC RKRNNLDEPW IYVICREAGI KCYVLAPDPP
101: SRCFRIMHVI EPPCSGRKGV TIEALDKKLF LLGGCSSVYD ATDEVYCYDA SSNRWSSAAP MPTARCYFVS ASLKEKLYIT DGYGLTDKSP NSWDIYDPAT
201: DSWCTHKNPL LTPDIVKFVA LGEELVTIHR AAWHRMYFAG VYDPLERTWR GRGNEIALCY SSPTVVVDGT LYMLEQSMGT KLMVWREDAK EWAMLGRLSD
301: KVTRPPCALV AIGRKIHVVG RGLSMVTVDV DTAARVDGFL VTTSVGPLVE EDLTPERCVV ITI

Best Arabidopsis Sequence Match ( AT3G61350.1 )
(BLAST)

001: MACIVEDPQR AGQSNETQIA LISGVPDDIS KSCLARVPRE YHMAMKCVSR RWRDFVCSDE MCDYRNEFNL AESWIYALCR DISGGVFLHM LNPFSSRRSW
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI

Arabidopsis Description

SKIP4F-box/kelch-repeat protein SKIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.