Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG30756 | Sorghum | cytosol | 94.8 | 94.35 |
| Os02t0748300-01 | Rice | cytosol | 88.42 | 87.79 |
| TraesCS6B01G334300.1 | Wheat | cytosol, nucleus, plastid | 87.47 | 87.06 |
| HORVU6Hr1G075590.1 | Barley | cytosol, nucleus, plastid | 87.47 | 87.06 |
| TraesCS6D01G285100.1 | Wheat | cytosol, nucleus, plastid | 87.47 | 87.06 |
| TraesCS6A01G306000.1 | Wheat | cytosol | 87.23 | 86.82 |
| GSMUA_Achr7P20970_001 | Banana | cytosol | 63.36 | 67.85 |
| GSMUA_Achr4P09990_001 | Banana | cytosol | 68.79 | 67.83 |
| GSMUA_Achr4P00520_001 | Banana | cytosol | 62.17 | 67.61 |
| VIT_17s0000g05920.t01 | Wine grape | cytosol | 62.88 | 60.05 |
| Solyc04g005670.1.1 | Tomato | cytosol | 56.97 | 59.65 |
| Zm00001d027856_P001 | Maize | cytosol | 60.28 | 59.44 |
| PGSC0003DMT400007346 | Potato | nucleus | 60.76 | 59.35 |
| Zm00001d048310_P001 | Maize | cytosol | 59.57 | 58.88 |
| CDY33755 | Canola | cytosol | 17.02 | 58.54 |
| Zm00001d014203_P001 | Maize | cytosol, nucleus, plastid | 60.76 | 58.01 |
| Zm00001d033012_P001 | Maize | cytosol | 60.52 | 57.4 |
| KRH54527 | Soybean | cytosol | 59.34 | 56.92 |
| Bra026838.1-P | Field mustard | nucleus | 54.61 | 56.76 |
| CDX81631 | Canola | nucleus | 54.61 | 56.48 |
| KRH63378 | Soybean | cytosol | 58.39 | 56.01 |
| Solyc03g113010.1.1 | Tomato | cytosol | 58.39 | 56.01 |
| CDY62015 | Canola | nucleus | 54.37 | 55.42 |
| CDY60836 | Canola | cytosol | 49.41 | 55.0 |
| AT1G14330.1 | Thale cress | nucleus | 57.21 | 54.88 |
| Bra026575.1-P | Field mustard | nucleus | 57.21 | 54.5 |
| CDY09349 | Canola | nucleus | 56.97 | 54.28 |
| CDY49094 | Canola | nucleus | 54.37 | 54.25 |
| PGSC0003DMT400046591 | Potato | extracellular | 58.39 | 54.17 |
| CDY62176 | Canola | nucleus | 57.21 | 54.14 |
| CDY17425 | Canola | cytosol | 50.83 | 53.62 |
| Bra017407.1-P | Field mustard | nucleus, plastid | 55.56 | 53.53 |
| CDY03028 | Canola | cytosol | 55.79 | 52.56 |
| KRH03453 | Soybean | cytosol | 50.59 | 52.45 |
| CDY45190 | Canola | nucleus | 56.03 | 52.32 |
| AT1G26930.1 | Thale cress | cytosol | 52.01 | 52.26 |
| Bra024801.1-P | Field mustard | nucleus | 55.79 | 52.1 |
| AT2G02870.1 | Thale cress | nucleus | 57.45 | 52.03 |
| CDY33754 | Canola | nucleus | 30.26 | 51.2 |
| CDY46430 | Canola | cytosol | 51.54 | 51.17 |
| CDY52764 | Canola | cytosol | 51.3 | 51.06 |
| Bra016297.1-P | Field mustard | cytosol | 51.3 | 50.94 |
| PGSC0003DMT400059324 | Potato | cytosol | 56.97 | 50.21 |
| Zm00001d007596_P001 | Maize | nucleus, plastid | 52.01 | 49.89 |
| CDY16205 | Canola | nucleus | 49.88 | 49.88 |
| Zm00001d048898_P001 | Maize | cytosol | 50.83 | 49.43 |
| Solyc04g005870.1.1 | Tomato | cytosol | 6.15 | 49.06 |
| VIT_01s0026g02080.t01 | Wine grape | nucleus | 61.94 | 48.43 |
| KRH56929 | Soybean | cytosol | 46.34 | 48.16 |
| KRH45883 | Soybean | cytosol | 58.63 | 46.01 |
| KRG99114 | Soybean | cytosol | 58.39 | 45.83 |
| KRH70694 | Soybean | cytosol | 57.92 | 45.45 |
| KRH74828 | Soybean | cytosol | 57.68 | 45.44 |
| PGSC0003DMT400091785 | Potato | cytosol, mitochondrion, plastid | 16.55 | 44.3 |
| Zm00001d026321_P001 | Maize | cytosol | 46.81 | 44.2 |
| Zm00001d002284_P003 | Maize | mitochondrion | 47.75 | 41.39 |
| PGSC0003DMT400007391 | Potato | cytosol | 11.82 | 37.31 |
| Solyc05g007220.2.1 | Tomato | nucleus | 55.32 | 36.34 |
| Zm00001d007538_P001 | Maize | cytosol | 24.35 | 34.68 |
| Zm00001d019862_P001 | Maize | cytosol | 43.97 | 27.19 |
| Zm00001d014338_P001 | Maize | cytosol | 18.68 | 22.7 |
| Zm00001d016553_P001 | Maize | cytosol | 17.49 | 20.33 |
| Zm00001d032991_P001 | Maize | cytosol | 20.09 | 19.45 |
| Zm00001d050862_P001 | Maize | cytosol, peroxisome, plastid | 20.57 | 19.08 |
| Zm00001d027827_P001 | Maize | cytosol, mitochondrion, nucleus | 19.15 | 18.45 |
| Zm00001d014986_P001 | Maize | cytosol | 15.6 | 18.18 |
| Zm00001d018813_P001 | Maize | mitochondrion | 17.49 | 18.05 |
| Zm00001d015744_P001 | Maize | plastid | 17.73 | 17.94 |
| Zm00001d049632_P001 | Maize | cytosol | 19.62 | 17.33 |
| Zm00001d046921_P001 | Maize | cytosol | 13.71 | 14.72 |
| Zm00001d046922_P001 | Maize | cytosol | 13.24 | 14.55 |
Protein Annotations
| EntrezGene:100382458 | Gene3D:2.120.10.80 | MapMan:35.1 | ProteinID:AQK56562.1 | EMBL:BT061822 | EMBL:BT064431 |
| EMBL:BT067319 | UniProt:C0HHL6 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR015915 |
| InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF01344 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF133 | SMART:SM00612 |
| SUPFAM:SSF117281 | UniParc:UPI0001948B08 | EnsemblPlantsGene:Zm00001d052253 | EnsemblPlants:Zm00001d052253_P001 | EnsemblPlants:Zm00001d052253_T001 | SEG:seg |
Description
F-box/kelch-repeat protein SKIP11
Coordinates
chr4:+:184810866..184812137
Molecular Weight (calculated)
47002.8 Da
IEP (calculated)
6.899
GRAVY (calculated)
-0.369
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEDQSCLIS RSLPGSCEQE SRLAYMTYHL LEITRSKRPP GTLSIEHDVV AALTKRTKSS EHQNSEALDC QGSNGQGDSD SSTLISSIGR DNSINCLARC
101: SRSDYGSIAS LNRSFRSLVR SGELYKERRQ QGISEHWVYF SCNVQEWEAY DPYRSRWMTL PRMPRNECFM HSDKESLAVG TELLVFGKEI LSHIILSYSI
201: LTHSWSRGVE MNAPRCLFGS ASFGEKAIIA GGMDADGRVL RSVELYNSET KRWTTLPSMN KARRKCSGVF MDGKFYVIGG MASNTEVLTC GEEYDLDRGT
301: WRVIENMSEG LNGASGAPPL VAVVENELYA AQYAGKLVRK YNKRDNSWTT LGELPERPEA VDGWGIAFRG CGERLLVIGG PRVLGGGMIE LHSWIPSEGP
401: LQWNMIGSKP SGNFVYNCAV MGC
101: SRSDYGSIAS LNRSFRSLVR SGELYKERRQ QGISEHWVYF SCNVQEWEAY DPYRSRWMTL PRMPRNECFM HSDKESLAVG TELLVFGKEI LSHIILSYSI
201: LTHSWSRGVE MNAPRCLFGS ASFGEKAIIA GGMDADGRVL RSVELYNSET KRWTTLPSMN KARRKCSGVF MDGKFYVIGG MASNTEVLTC GEEYDLDRGT
301: WRVIENMSEG LNGASGAPPL VAVVENELYA AQYAGKLVRK YNKRDNSWTT LGELPERPEA VDGWGIAFRG CGERLLVIGG PRVLGGGMIE LHSWIPSEGP
401: LQWNMIGSKP SGNFVYNCAV MGC
001: MLEAPSYLVS RDLPSSCEEE SKWIYNAHCV LQLSLRKRLL DDTDVEGSSA KKMLRVDHGS RGESDKITDS LQLAKTYQSS NQSQQGGGGD QQSSPVTRLD
101: QNALLNCLAH CSLSDFGSIA STNRTFRSLI KDSELYRLRR AKGIVEHWIY FSCRLLEWEA YDPNGDRWLR VPKMTFNECF MCSDKESLAV GTELLVFGKE
201: IMSHVIYRYS ILTNTWTSGM QMNVPRCLFG SASLGEIAVI AGGCDPRGRI LSSAELYNSE TGEWTVIPSM NKARKMCSSV FMDGNFYCIG GIGEGNSKML
301: LCGEVYDLKK KTWTLIPNML PERSSGGGGD QAKEIAAATA ASEAPPLVAV VKDELYAANY AQQEVKKYDK RLNVWNKVGN LPERASSMNG WGMAFRACGD
401: QLVVVGGPRA IGGGFIEINA CVPSEGTQLH WRVLASKPSG NFVYNCAVMG C
101: QNALLNCLAH CSLSDFGSIA STNRTFRSLI KDSELYRLRR AKGIVEHWIY FSCRLLEWEA YDPNGDRWLR VPKMTFNECF MCSDKESLAV GTELLVFGKE
201: IMSHVIYRYS ILTNTWTSGM QMNVPRCLFG SASLGEIAVI AGGCDPRGRI LSSAELYNSE TGEWTVIPSM NKARKMCSSV FMDGNFYCIG GIGEGNSKML
301: LCGEVYDLKK KTWTLIPNML PERSSGGGGD QAKEIAAATA ASEAPPLVAV VKDELYAANY AQQEVKKYDK RLNVWNKVGN LPERASSMNG WGMAFRACGD
401: QLVVVGGPRA IGGGFIEINA CVPSEGTQLH WRVLASKPSG NFVYNCAVMG C
Arabidopsis Description
F-box/kelch-repeat protein At1g74510 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA63]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.