Factsheet for TraesCS6B01G052900.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G037900.1	Wheat	cytosol	91.36	96.14
TraesCS6D01G043400.1	Wheat	cytosol	96.07	96.07
HORVU6Hr1G007030.1	Barley	cytosol	83.25	91.91
Os02t0114600-02	Rice	cytosol	72.51	76.94
EES06149	Sorghum	cytosol	66.75	73.7
Zm00001d014986_P001	Maize	cytosol	66.49	69.97
GSMUA_Achr4P20790_001	Banana	extracellular	52.88	53.58
VIT_15s0046g02710.t01	Wine grape	cytosol	44.24	47.08
VIT_15s0046g02790.t01	Wine grape	cytosol	31.41	43.48
KRH48153	Soybean	cytosol	38.48	40.61
PGSC0003DMT400000478	Potato	nucleus	41.1	39.35
Solyc01g094520.2.1	Tomato	nucleus	41.1	39.35
AT3G61350.2	Thale cress	cytosol	36.65	39.11
CDY58793	Canola	cytosol	36.65	39.0
CDY51562	Canola	cytosol	36.39	38.72
Bra003447.1-P	Field mustard	cytosol	35.86	38.16
KRH48156	Soybean	cytosol	36.13	38.12
KRH48154	Soybean	cytosol	36.39	37.77
KRH65052	Soybean	cytosol	31.41	37.5
KRH65051	Soybean	cytosol	29.84	34.76
TraesCS7B01G234000.1	Wheat	cytosol	21.47	24.7
TraesCS6B01G243200.1	Wheat	cytosol	21.99	23.8
TraesCS1B01G154600.1	Wheat	plastid	25.65	22.37
TraesCS4B01G283400.1	Wheat	cytosol	24.61	21.86
TraesCS3B01G611700.1	Wheat	cytosol	24.35	21.78
TraesCS2B01G298300.1	Wheat	mitochondrion	21.73	21.67
TraesCS4B01G283500.1	Wheat	cytosol	24.35	21.58
TraesCS3B01G481500.1	Wheat	cytosol, plastid	20.68	20.57
TraesCS6B01G209700.1	Wheat	cytosol	22.77	20.57
TraesCS6B01G227500.1	Wheat	cytosol, peroxisome, plastid	22.77	18.91
TraesCS6B01G334300.1	Wheat	cytosol, nucleus, plastid	18.59	16.71
TraesCS2B01G484200.1	Wheat	cytosol	17.02	14.48

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006950	GO:GO:0008150	GO:GO:0009409	GO:GO:0009628	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414
PANTHER:PTHR24414:SF40	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS6B01G052900
EnsemblPlants:TraesCS6B01G052900.2	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:32323995..32325252

Molecular Weight (calculated)

43104.0 Da

IEP (calculated)

7.394

GRAVY (calculated)

-0.135

Length

382 amino acids

Sequence
(BLAST)

001: MASIRTAVPF SPASFCVNRM NHHLESSDYQ KLFCRKMDSA ELQTPLLHGL PDEIALLCLA RVPRQYHNAL RCVSRGWKAL LSSEEWHSYR KRNNLAESWI
101: YVICRGTGFK CYVLVPDPTT RSLKVIQVME PPCSGREGVS IETLDRRLFL MGGCSWLKDA NDEVYCYDAA SNHWSKAPPM PTARCFFVSA ALNDKIYVTG
201: GLGLTDKSPN SWDIYDKATD SWFSHKNPML TPDIVKFVAL DDELVTIHKA SWNRMYFAGI YDPVDQSWRG KENEIALCWS GPTVVVDGML YMLDQSLGTK
301: LMVWLNETKQ WVMVGRLSDK LTRPPCELVA IGRKIYVIGK GLSTVTIDMD MAARVDGFLV SSSTGPLMEH DFSPEKCSVI TI

Best Arabidopsis Sequence Match ( AT3G61350.1 )
(BLAST)

001: MACIVEDPQR AGQSNETQIA LISGVPDDIS KSCLARVPRE YHMAMKCVSR RWRDFVCSDE MCDYRNEFNL AESWIYALCR DISGGVFLHM LNPFSSRRSW
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI

Arabidopsis Description

SKIP4F-box/kelch-repeat protein SKIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.