Factsheet for TraesCS1B01G154600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G136700.1	Wheat	nucleus	98.86	92.72
Os10t0409900-01	Rice	plastid	91.55	90.72
EER91632	Sorghum	plastid	89.95	90.16
HORVU1Hr1G035200.1	Barley	plasma membrane	96.8	89.26
Zm00001d032991_P001	Maize	cytosol	88.58	88.79
TraesCS4B01G283400.1	Wheat	cytosol	77.17	78.6
TraesCS4B01G283500.1	Wheat	cytosol	76.48	77.73
TraesCS3B01G611700.1	Wheat	cytosol	75.57	77.52
GSMUA_Achr7P27010_001	Banana	cytosol	70.55	74.28
GSMUA_Achr3P29560_001	Banana	cytosol	68.26	72.75
Solyc01g005970.2.1	Tomato	cytosol	71.46	71.62
VIT_06s0004g00860.t01	Wine grape	cytosol	71.23	71.4
PGSC0003DMT400081852	Potato	cytosol	71.23	71.4
PGSC0003DMT400034149	Potato	cytosol	70.09	70.25
KRH58897	Soybean	cytosol	69.63	69.79
Solyc01g022740.2.1	Tomato	cytosol	69.18	69.34
KRH42810	Soybean	cytosol	69.18	69.34
CDY26117	Canola	cytosol	68.49	68.97
Bra011908.1-P	Field mustard	mitochondrion	68.49	68.97
AT1G55270.1	Thale cress	mitochondrion	68.26	68.89
CDY08233	Canola	mitochondrion	68.26	68.74
CDY10574	Canola	cytosol	68.04	68.51
CDY02451	Canola	cytosol	68.04	68.51
Bra030872.1-P	Field mustard	cytosol	67.81	68.28
CDY33062	Canola	mitochondrion, plastid	65.3	65.75
CDY24045	Canola	mitochondrion	65.3	65.75
Bra037989.1-P	Field mustard	cytosol, plastid	64.84	65.29
KRH11716	Soybean	cytosol, golgi, plastid	50.46	59.41
KRH36711	Soybean	cytosol	48.86	53.1
TraesCS6B01G209700.1	Wheat	cytosol	48.63	50.35
GSMUA_Achr4P03630_001	Banana	plasma membrane	61.64	31.8
TraesCS6B01G052900.2	Wheat	cytosol	22.37	25.65
TraesCS3B01G481500.1	Wheat	cytosol, plastid	21.92	25.0
TraesCS7B01G234000.1	Wheat	cytosol	18.95	25.0
TraesCS2B01G298300.1	Wheat	mitochondrion	21.46	24.54
TraesCS6B01G243200.1	Wheat	cytosol	19.41	24.08
TraesCS6B01G227500.1	Wheat	cytosol, peroxisome, plastid	23.97	22.83
TraesCS2B01G484200.1	Wheat	cytosol	21.46	20.94
TraesCS6B01G334300.1	Wheat	cytosol, nucleus, plastid	19.86	20.47

Protein Annotations

EnsemblPlants:TraesCS1B01G154600.1	EnsemblPlantsGene:TraesCS1B01G154600	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PANTHER:PTHR24412	PANTHER:PTHR24412:SF234	PFAM:PF00646	PFAM:PF01344	SEG:seg	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	MapMan:9.2.1.1.3	:	:	:

Description

No Description!

Coordinates

chr1B:+:259021762..259026711

Molecular Weight (calculated)

49640.1 Da

IEP (calculated)

9.628

GRAVY (calculated)

-0.285

Length

438 amino acids

Sequence
(BLAST)

001: MDSASRVAPP PVSAGVRVRA PLVESVSCYC RLDTGLKTVV DARKFASGAK MCMQPDAKLT KRKSRGSRKE RCRAQAPLLP GLPDDLAIAC LIRVPRVEHP
101: NLRTVCKRWN RLLSGNYYYS LRKKLSMAEE WVYVFKRDRE GKISWHAFDP LNQLWKSLPP VPPEYSEALG FGCAVLSGCY LYLFGGKDPL RGSMRRVVFY
201: NARTNKWHRA PDMLRKRHFF GSCVINNCLY VAGGECEGIQ RTLQSAEVYD PNRNRWVCIP EMNNGMVPFI GVVYDDKWFL KGLDSHRQVT CEVYLPSSNL
301: WSTIDDEMVT GWRNPSISFN GRLYSSDCRD GCKLRVYDAN TGTWARFIDS KHHLGSSRAF EAAGLVSLNG KLCIIRNNMS ITLVDILHPT MSIETDSACM
401: WETVARKGQH KSFVANLWST IAGRNLKSHI IHCQVLQI

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.