Factsheet for TraesCS6B01G209700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G167900.1	Wheat	plastid	95.98	95.98
TraesCS6A01G175700.1	Wheat	plastid	95.27	95.27
HORVU6Hr1G037850.2	Barley	plastid	92.2	91.55
Os02t0202900-00	Rice	cytosol	75.65	73.39
Zm00001d015744_P001	Maize	plastid	70.92	71.77
KXG29748	Sorghum	plastid	73.52	71.49
GSMUA_Achr7P08330_001	Banana	cytosol	52.96	56.85
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	52.25	54.17
TraesCS3B01G611700.1	Wheat	cytosol	49.17	48.71
TraesCS1B01G154600.1	Wheat	plastid	50.35	48.63
TraesCS4B01G283400.1	Wheat	cytosol	47.99	47.21
TraesCS4B01G283500.1	Wheat	cytosol	47.52	46.64
TraesCS6B01G052900.2	Wheat	cytosol	20.57	22.77
TraesCS7B01G234000.1	Wheat	cytosol	17.02	21.69
TraesCS2B01G298300.1	Wheat	mitochondrion	19.62	21.67
TraesCS3B01G481500.1	Wheat	cytosol, plastid	19.39	21.35
TraesCS6B01G227500.1	Wheat	cytosol, peroxisome, plastid	23.17	21.3
TraesCS6B01G243200.1	Wheat	cytosol	17.49	20.96
TraesCS2B01G484200.1	Wheat	cytosol	20.09	18.93
TraesCS6B01G334300.1	Wheat	cytosol, nucleus, plastid	18.2	18.12

Protein Annotations

EnsemblPlants:TraesCS6B01G209700.1	EnsemblPlantsGene:TraesCS6B01G209700	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PANTHER:PTHR24412	PANTHER:PTHR24412:SF234	PFAM:PF00646	PFAM:PF01344	SEG:seg	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	MapMan:9.2.1.1.3	:	:	:

Description

No Description!

Coordinates

chr6B:+:276520637..276529536

Molecular Weight (calculated)

46294.7 Da

IEP (calculated)

10.346

GRAVY (calculated)

-0.216

Length

423 amino acids

Sequence
(BLAST)

001: MDRPIQAPLV DSSACLCRAE RAAAVASTGR HVPRSRPCVQ SSVRASIHPL SEKRSSRADR RSDGQRPLLP GLPDDLAIAC LIRVPRADHC KLRLVCRRWL
101: RLLAGNYFYG LRGRLGLAQQ WLYAFKSDGD GRVSWDVLDP AAAAWRSMPP VPAEYAAAAG VQLRRARGCH LYLLGSRDPR RGAMRRVVFY SARSNRWHRA
201: PDMLRRRHCF GACVMGNRLY VAGGESGGGG LRSADVFDPA KNRWSFLSDM ARALVPFVSV VHGGRWYVKG LGAERQVLSQ VYTPETDKWS TVATLDSMVT
301: GWRSPSACID GRLYAADCKD GCRLRAYDEA ADAWSGCASS GHHLGSSHAL EAVAMVTLRG KLCVVRNDMS VSVVDVAAGE GNQPWETLVG KGQIKSFVTN
401: LLASIAGRGR AKNRVLHCQV LEA

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.