Factsheet for PGSC0003DMT400034149

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g022740.2.1	Tomato	cytosol	98.4	98.4
PGSC0003DMT400081852	Potato	cytosol	89.7	89.7
VIT_06s0004g00860.t01	Wine grape	cytosol	86.5	86.5
KRH58897	Soybean	cytosol	81.01	81.01
KRH42810	Soybean	cytosol	80.55	80.55
AT1G55270.1	Thale cress	mitochondrion	77.8	78.34
Bra011908.1-P	Field mustard	mitochondrion	77.12	77.47
CDY26117	Canola	cytosol	77.12	77.47
CDY08233	Canola	mitochondrion	76.89	77.24
CDY10574	Canola	cytosol	76.2	76.55
CDY02451	Canola	cytosol	76.2	76.55
Bra030872.1-P	Field mustard	cytosol	75.97	76.32
GSMUA_Achr7P27010_001	Banana	cytosol	68.88	72.36
GSMUA_Achr3P29560_001	Banana	cytosol	67.51	71.78
CDY33062	Canola	mitochondrion, plastid	70.94	71.26
EER91632	Sorghum	plastid	71.17	71.17
CDY24045	Canola	mitochondrion	70.48	70.8
Bra037989.1-P	Field mustard	cytosol, plastid	70.25	70.57
Zm00001d032991_P001	Maize	cytosol	70.25	70.25
Os10t0409900-01	Rice	plastid	70.94	70.14
TraesCS1B01G154600.1	Wheat	plastid	70.25	70.09
TraesCS4D01G282200.1	Wheat	cytosol	66.59	69.78
Os03t0167800-02	Rice	cytosol	69.11	68.95
TraesCS4A01G020200.1	Wheat	cytosol	67.05	68.14
TraesCS4B01G283400.1	Wheat	cytosol	66.59	67.67
EER95442	Sorghum	mitochondrion	67.51	67.35
HORVU4Hr1G074720.7	Barley	plasma membrane	67.28	66.97
TraesCS4B01G283500.1	Wheat	cytosol	65.9	66.82
TraesCS3D01G540000.1	Wheat	cytosol	64.99	66.51
TraesCS3B01G611700.1	Wheat	cytosol	64.99	66.51
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	66.59	66.29
KRH11716	Soybean	cytosol, golgi, plastid	56.29	66.13
TraesCS3A01G534600.1	Wheat	cytosol	64.53	65.43
TraesCS1D01G136700.1	Wheat	nucleus	69.79	65.31
HORVU1Hr1G035200.1	Barley	plasma membrane	69.34	63.79
KRH36711	Soybean	cytosol	55.15	59.8
HORVU3Hr1G116690.2	Barley	mitochondrion	65.45	58.73
GSMUA_Achr4P03630_001	Banana	plasma membrane	61.56	31.68
PGSC0003DMT400008228	Potato	cytosol, mitochondrion, peroxisome, plastid	25.86	28.11
PGSC0003DMT400032733	Potato	cytosol, plastid	26.32	24.21
PGSC0003DMT400049746	Potato	cytosol	18.76	23.77
PGSC0003DMT400000478	Potato	nucleus	21.51	23.56
PGSC0003DMT400013635	Potato	cytosol	18.54	23.48
PGSC0003DMT400020936	Potato	cytosol	20.37	22.94
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	7.55	20.89
PGSC0003DMT400021985	Potato	nucleus	19.22	20.14
PGSC0003DMT400007346	Potato	nucleus	18.99	19.17
PGSC0003DMT400046591	Potato	extracellular	18.31	17.54
PGSC0003DMT400059324	Potato	cytosol	19.22	17.5
PGSC0003DMT400007391	Potato	cytosol	4.81	15.67

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102596716	Gene3D:2.120.10.80	MapMan:9.2.1.1.3	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	UniProt:M1B070	PFAM:PF00646	PFAM:PF01344	PFAM:PF13964	EnsemblPlantsGene:PGSC0003DMG400013119
PGSC:PGSC0003DMG400013119	EnsemblPlants:PGSC0003DMT400034149	PFscan:PS50181	PANTHER:PTHR24412	PANTHER:PTHR24412:SF234	SMART:SM00256
SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000296BDE0	RefSeq:XP_006341889.1	RefSeq:XP_006341890.1
RefSeq:XP_006341891.1	RefSeq:XP_006341892.1	SEG:seg	:	:	:

Description

Protein AFR [Source:PGSC_GENE;Acc:PGSC0003DMG400013119]

Coordinates

chr1:+:52787118..52792578

Molecular Weight (calculated)

49521.8 Da

IEP (calculated)

10.018

GRAVY (calculated)

-0.282

Length

437 amino acids

Sequence
(BLAST)

001: MDQTIERSSN AHRGFRVQPP LVDSVSCYCN VDSGLKTVAG ARKFVPGSKL CIQSDISSHA HKSKNSRRER SRVQPPLLPS LPDDLAIACL VRVPRVELSK
101: LRLVCKRWYR LLAGNFFYSQ RKSLGMAEEW VYVVKRDRDG RISWHAFDPT YQLWQPLPPV PGDYSEALGF GCAVLSGCHL YLFGGKDPIK GSMRRVIFYN
201: ARTNRWHRAP DMLRKRHFFG SCVINNCLYV AGGECEGIQR TLRSAEVYDP NRKRWSFIAD MSTAMVPFIG VVYDGKWFIK GLGSHREVLS EAYNPDTNAW
301: SPVNNRMVAG WRNPSISMNG RLYALDCRDG CKLRVYDEST QSWIRFIDSK LHLGSSRALE AAALVPLNGK LCIIRNNMSI SIIDVLSPDK RVETNPHLWE
401: NIAGKGHFRT MFTNLWSSIA GRAGLKSHIV HCQVLQV

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.