Factsheet for TraesCS3D01G540000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G611700.1	Wheat	cytosol	97.66	97.66
TraesCS3A01G534600.1	Wheat	cytosol	95.08	94.2
TraesCS4D01G282200.1	Wheat	cytosol	87.59	89.69
HORVU3Hr1G116690.2	Barley	mitochondrion	96.02	84.19
Os03t0167800-02	Rice	cytosol	79.86	77.85
EER95442	Sorghum	mitochondrion	77.75	75.8
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	76.35	74.26
GSMUA_Achr7P27010_001	Banana	cytosol	68.62	70.43
TraesCS1D01G136700.1	Wheat	nucleus	76.81	70.24
GSMUA_Achr3P29560_001	Banana	cytosol	66.51	69.1
VIT_06s0004g00860.t01	Wine grape	cytosol	68.38	66.82
PGSC0003DMT400081852	Potato	cytosol	68.15	66.59
Solyc01g005970.2.1	Tomato	cytosol	67.92	66.36
CDY08233	Canola	mitochondrion	67.45	66.21
Bra011908.1-P	Field mustard	mitochondrion	66.98	65.75
CDY26117	Canola	cytosol	66.98	65.75
AT1G55270.1	Thale cress	mitochondrion	66.74	65.67
PGSC0003DMT400034149	Potato	cytosol	66.51	64.99
CDY02451	Canola	cytosol	66.04	64.83
CDY10574	Canola	cytosol	66.04	64.83
KRH42810	Soybean	cytosol	66.28	64.76
KRH58897	Soybean	cytosol	66.28	64.76
Bra030872.1-P	Field mustard	cytosol	65.81	64.6
Solyc01g022740.2.1	Tomato	cytosol	66.04	64.53
CDY33062	Canola	mitochondrion, plastid	63.23	62.07
CDY24045	Canola	mitochondrion	63.23	62.07
Bra037989.1-P	Field mustard	cytosol, plastid	62.76	61.61
KRH11716	Soybean	cytosol, golgi, plastid	48.71	55.91
TraesCS6D01G167900.1	Wheat	plastid	49.41	49.88
KRH36711	Soybean	cytosol	46.84	49.63
GSMUA_Achr4P03630_001	Banana	plasma membrane	60.19	30.27
TraesCS4D01G286700.1	Wheat	cytosol	20.14	26.06
TraesCS3D01G439000.1	Wheat	cytosol	22.01	24.48
TraesCS2D01G499800.1	Wheat	mitochondrion	23.18	24.44
TraesCS2D01G279700.1	Wheat	mitochondrion	20.37	22.72
TraesCS6D01G043400.1	Wheat	cytosol	20.14	22.51
TraesCS6D01G195800.1	Wheat	cytosol	18.5	22.38
TraesCS7D01G016400.1	Wheat	cytosol, plastid	23.65	22.15
TraesCS2D01G463000.1	Wheat	cytosol	22.72	21.7
TraesCS7D01G007100.1	Wheat	cytosol	18.74	21.51
TraesCS7D01G483900.1	Wheat	cytosol	19.2	21.41
TraesCS6D01G285100.1	Wheat	cytosol, nucleus, plastid	20.14	20.24
TraesCS7D01G005100.1	Wheat	cytosol	10.07	20.0

Protein Annotations

EnsemblPlants:TraesCS3D01G540000.1	EnsemblPlantsGene:TraesCS3D01G540000	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	ncoils:Coil
PANTHER:PTHR24412	PANTHER:PTHR24412:SF234	PFAM:PF00646	PFAM:PF01344	SEG:seg	SMART:SM00256
SMART:SM00612	SUPFAM:SSF117281	MapMan:9.2.1.1.3	:	:	:

Description

No Description!

Coordinates

chr3D:+:611563005..611565906

Molecular Weight (calculated)

48684.9 Da

IEP (calculated)

10.145

GRAVY (calculated)

-0.388

Length

427 amino acids

Sequence
(BLAST)

001: MQRRRLAEQE GESVSCYCRV DGGLKTVVNA RKFVPGARLC MQPDVKPNKR KTRSSRKERC RTPAPLLPGL PDDLAISCLM RVSRAEHPNL RLVCKKWSRL
101: LSGNYYYSLR KKFGMAEEWV YVFKRDRDQK LSWHAFDPVH QLWRSLPPVP PEYSEAVGFG CAVLSGCYLY LFGGKNPVRG SMRHVVYYNT RTNKWHRAPD
201: MLRKRHLFGS CVINNCLYVA GGECEGTQRT LRSAEVYNPN RNRWSCITEM STGMVPFTGI VYDGKWFLRG LDSHRQVVSE VYLPTSNTWS TTGNALVAGL
301: RNPTISFNGR LYSADCRDAC KLRVYDGDIG SWTRFMDSRR HLGSSRAFEA VALVSLNGKI CVIRNNMGMT LVDVCDPTKV IEMESARVWE TFARKGHQHR
401: SLMANLWSAI AGRNLKAHII HCQVLQA

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.