Factsheet for PGSC0003DMT400081852

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005970.2.1	Tomato	cytosol	98.86	98.86
VIT_06s0004g00860.t01	Wine grape	cytosol	90.16	90.16
PGSC0003DMT400034149	Potato	cytosol	89.7	89.7
KRH42810	Soybean	cytosol	83.75	83.75
KRH58897	Soybean	cytosol	83.07	83.07
AT1G55270.1	Thale cress	mitochondrion	79.41	79.95
Bra011908.1-P	Field mustard	mitochondrion	78.72	79.08
CDY26117	Canola	cytosol	78.72	79.08
CDY08233	Canola	mitochondrion	78.26	78.62
CDY02451	Canola	cytosol	78.03	78.39
CDY10574	Canola	cytosol	77.8	78.16
Bra030872.1-P	Field mustard	cytosol	77.8	78.16
GSMUA_Achr7P27010_001	Banana	cytosol	70.71	74.28
GSMUA_Achr3P29560_001	Banana	cytosol	69.11	73.48
CDY33062	Canola	mitochondrion, plastid	72.77	73.1
CDY24045	Canola	mitochondrion	72.31	72.64
EER91632	Sorghum	plastid	72.31	72.31
Bra037989.1-P	Field mustard	cytosol, plastid	71.85	72.18
Os10t0409900-01	Rice	plastid	72.08	71.27
TraesCS1B01G154600.1	Wheat	plastid	71.4	71.23
Zm00001d032991_P001	Maize	cytosol	71.17	71.17
TraesCS4D01G282200.1	Wheat	cytosol	66.59	69.78
Os03t0167800-02	Rice	cytosol	69.57	69.41
KRH11716	Soybean	cytosol, golgi, plastid	59.04	69.35
TraesCS4A01G020200.1	Wheat	cytosol	67.73	68.84
TraesCS3D01G540000.1	Wheat	cytosol	66.59	68.15
TraesCS3B01G611700.1	Wheat	cytosol	66.59	68.15
TraesCS4B01G283400.1	Wheat	cytosol	67.05	68.14
TraesCS4B01G283500.1	Wheat	cytosol	66.36	67.29
HORVU4Hr1G074720.7	Barley	plasma membrane	67.51	67.2
EER95442	Sorghum	mitochondrion	67.28	67.12
TraesCS1D01G136700.1	Wheat	nucleus	70.94	66.38
TraesCS3A01G534600.1	Wheat	cytosol	65.45	66.36
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	66.36	66.06
HORVU1Hr1G035200.1	Barley	plasma membrane	70.48	64.84
KRH36711	Soybean	cytosol	56.98	61.79
HORVU3Hr1G116690.2	Barley	mitochondrion	66.36	59.55
GSMUA_Achr4P03630_001	Banana	plasma membrane	62.24	32.04
PGSC0003DMT400008228	Potato	cytosol, mitochondrion, peroxisome, plastid	25.63	27.86
PGSC0003DMT400049746	Potato	cytosol	19.91	25.22
PGSC0003DMT400000478	Potato	nucleus	22.88	25.06
PGSC0003DMT400013635	Potato	cytosol	19.45	24.64
PGSC0003DMT400032733	Potato	cytosol, plastid	26.77	24.63
PGSC0003DMT400020936	Potato	cytosol	20.59	23.2
PGSC0003DMT400007346	Potato	nucleus	19.68	19.86
PGSC0003DMT400021985	Potato	nucleus	18.76	19.66
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	7.09	19.62
PGSC0003DMT400059324	Potato	cytosol	19.91	18.12
PGSC0003DMT400046591	Potato	extracellular	18.54	17.76
PGSC0003DMT400007391	Potato	cytosol	4.81	15.67

Protein Annotations

EntrezGene:102604982	Gene3D:2.120.10.80	MapMan:9.2.1.1.3	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
UniProt:M1D554	PFAM:PF00646	PFAM:PF01344	EnsemblPlantsGene:PGSC0003DMG400032138	PGSC:PGSC0003DMG400032138	EnsemblPlants:PGSC0003DMT400081852
PANTHER:PTHR24412	PANTHER:PTHR24412:SF234	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00029616B0
RefSeq:XP_006354154.1	:	:	:	:	:

Description

Protein AFR [Source:PGSC_GENE;Acc:PGSC0003DMG400032138]

Coordinates

chr1:+:1500584..1506897

Molecular Weight (calculated)

49269.4 Da

IEP (calculated)

9.643

GRAVY (calculated)

-0.274

Length

437 amino acids

Sequence
(BLAST)

001: MDQTIERSPN AHRGFRVQAP LVDSVSCYCK VDSGFKTVVG ARKFVAGSKI CIQPDINPHA HKTKNSRRER SRVQSPLLPG LPDDLAIACL IRVPRVEHNK
101: LRLVCKRWYR LLAGNFFYSL RKSLGMAEEW VYVIKRDRDG RISWHAFDPT YQLWQPLPPL PGEYSEALGF GCAVLSGCHL YLFGGKDPIK GSMRRVIFYS
201: ARTNKWHRAP DMLRKRHFFG SCVINNCLYV AGGECEGIQR TLRSAEVYDP NRNRWTFITD MSTAMVPFIG VIYDGKWFLK GLGSHREVLS EAYNPETNGW
301: SPVTDGMVAG WRNPSISMNG CLYALDCRDG CKLRVYDGAS DSWNRFIDSK LHLGSSRALE AAALVPLNGK LCIIRNNMSI SMVDVSSPDK QVETNPHLWE
401: NIAGKGHFRT LFTNLWSSIA GRGGLKSHIV HCQVLQA

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.