Factsheet for PGSC0003DMT400049746

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 2
nucleus 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065400.1.1	Tomato	cytosol	97.97	97.97
PGSC0003DMT400013635	Potato	cytosol	79.13	79.13
VIT_07s0151g00770.t01	Wine grape	cytosol	77.97	77.97
KRH67237	Soybean	cytosol	77.97	77.97
KRH32035	Soybean	cytosol	77.39	77.62
KRG95556	Soybean	cytosol	77.39	77.39
KRH71403	Soybean	cytosol	76.81	77.03
CDX82306	Canola	cytosol	71.3	71.1
Bra001739.1-P	Field mustard	cytosol	71.01	70.81
CDY22982	Canola	cytosol	71.01	70.81
AT3G63220.2	Thale cress	cytosol	71.01	69.6
Bra037535.1-P	Field mustard	cytosol	69.86	69.45
CDY58259	Canola	cytosol	68.7	68.3
CDY18573	Canola	cytosol	68.41	67.82
CDX99248	Canola	cytosol	68.41	67.82
GSMUA_Achr6P24370_001	Banana	cytosol	63.77	63.4
Os10t0388200-01	Rice	cytosol	63.48	63.11
Zm00001d014338_P001	Maize	cytosol	63.48	62.93
OQU82118	Sorghum	cytosol	63.48	62.93
TraesCS7B01G234000.1	Wheat	cytosol	58.55	60.84
TraesCS6D01G195800.1	Wheat	cytosol	62.03	60.62
TraesCS6B01G243200.1	Wheat	cytosol	62.03	60.62
TraesCS6A01G211500.1	Wheat	extracellular, golgi	48.99	54.87
PGSC0003DMT400000478	Potato	nucleus	25.22	21.8
PGSC0003DMT400008228	Potato	cytosol, mitochondrion, peroxisome, plastid	23.48	20.15
PGSC0003DMT400081852	Potato	cytosol	25.22	19.91
PGSC0003DMT400032733	Potato	cytosol, plastid	26.67	19.37
PGSC0003DMT400034149	Potato	cytosol	23.77	18.76
PGSC0003DMT400020936	Potato	cytosol	20.87	18.56
HORVU6Hr1G007080.1	Barley	cytosol	4.64	18.39
PGSC0003DMT400021985	Potato	nucleus	21.16	17.51
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	7.83	17.09
PGSC0003DMT400007346	Potato	nucleus	19.71	15.7
PGSC0003DMT400046591	Potato	extracellular	20.58	15.57
PGSC0003DMT400059324	Potato	cytosol	20.58	14.79
PGSC0003DMT400007391	Potato	cytosol	4.64	11.94

Protein Annotations

EntrezGene:102592465	EntrezGene:107061014	Gene3D:2.120.10.80	MapMan:35.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M1BP94	PFAM:PF01344
EnsemblPlantsGene:PGSC0003DMG400019326	PGSC:PGSC0003DMG400019326	EnsemblPlants:PGSC0003DMT400049746	PANTHER:PTHR24414	PANTHER:PTHR24414:SF29	SMART:SM00612
SUPFAM:SSF117281	UniParc:UPI0002965C5F	RefSeq:XP_006349694.1	RefSeq:XP_006349696.1	RefSeq:XP_015165176.1	RefSeq:XP_015165177.1
RefSeq:XP_015165178.1	RefSeq:XP_015165179.1	RefSeq:XP_015165181.1	SEG:seg	:	:

Description

Protein AFR [Source:PGSC_GENE;Acc:PGSC0003DMG400019326]

Coordinates

chr9:-:47929609..47936286

Molecular Weight (calculated)

38698.9 Da

IEP (calculated)

6.881

GRAVY (calculated)

0.048

Length

345 amino acids

Sequence
(BLAST)

001: MSVLIEGLPD AVALRCLARV PFYLHPKLEL VSHSWQAAIR SGELFKARRE VNSSEEFLCV CAFDPDNLWQ LYDPMRDLWI TLPVLPSNIR HLAHFGVVST
101: AGKLFVLGGG SDAVDPLTGD QDGSFATDEV WSYDPVTREW SLCASMIVPR AMFSCCVFDG KIVVAGGFTN CRKSICKAEI YDPEKNVWDP IPDLHHTHNS
201: ACSGVVIGGK VHVLHKGLST VQVLENVKQG WTVHEYGWLQ GPMAVVRGEL YVLSHWLIYR QERETRKMVV SASEFRRRIG FAMIGLGDDI YIVGGVIGPE
301: RWNWDIKLLS DVDVLTLGNE RQVWRQVAPM TRCRGTVLGC TLMRI

Best Arabidopsis Sequence Match ( AT3G63220.1 )
(BLAST)

001: MSGLLDGIPE AVALRCLAHV PLHLHPNLEL VSRSWRAAIR SHELFRVRKE LRSSEHLLCV CAFDPENIWQ VYSPNCDRWL TLPLLPSRIR HLAHFGAVTT
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI

Arabidopsis Description

SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.