Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g008690.1.1 | Tomato | cytosol | 98.55 | 98.55 |
| PGSC0003DMT400049746 | Potato | cytosol | 79.13 | 79.13 |
| VIT_07s0151g00770.t01 | Wine grape | cytosol | 72.46 | 72.46 |
| KRH32035 | Soybean | cytosol | 71.59 | 71.8 |
| KRH67237 | Soybean | cytosol | 71.59 | 71.59 |
| KRG95556 | Soybean | cytosol | 71.01 | 71.01 |
| KRH71403 | Soybean | cytosol | 70.72 | 70.93 |
| CDX82306 | Canola | cytosol | 65.51 | 65.32 |
| CDY22982 | Canola | cytosol | 65.51 | 65.32 |
| AT3G63220.2 | Thale cress | cytosol | 66.38 | 65.06 |
| Bra001739.1-P | Field mustard | cytosol | 65.22 | 65.03 |
| CDX99248 | Canola | cytosol | 64.06 | 63.51 |
| Bra037535.1-P | Field mustard | cytosol | 63.19 | 62.82 |
| GSMUA_Achr6P24370_001 | Banana | cytosol | 62.61 | 62.25 |
| CDY58259 | Canola | cytosol | 62.32 | 61.96 |
| CDY18573 | Canola | cytosol | 61.74 | 61.21 |
| Os10t0388200-01 | Rice | cytosol | 60.29 | 59.94 |
| OQU82118 | Sorghum | cytosol | 60.0 | 59.48 |
| Zm00001d014338_P001 | Maize | cytosol | 59.71 | 59.2 |
| TraesCS7B01G234000.1 | Wheat | cytosol | 55.94 | 58.13 |
| TraesCS6D01G195800.1 | Wheat | cytosol | 59.42 | 58.07 |
| TraesCS6B01G243200.1 | Wheat | cytosol | 59.42 | 58.07 |
| TraesCS6A01G211500.1 | Wheat | extracellular, golgi | 47.83 | 53.57 |
| PGSC0003DMT400000478 | Potato | nucleus | 24.35 | 21.05 |
| PGSC0003DMT400081852 | Potato | cytosol | 24.64 | 19.45 |
| PGSC0003DMT400008228 | Potato | cytosol, mitochondrion, peroxisome, plastid | 22.61 | 19.4 |
| PGSC0003DMT400032733 | Potato | cytosol, plastid | 25.8 | 18.74 |
| PGSC0003DMT400034149 | Potato | cytosol | 23.48 | 18.54 |
| PGSC0003DMT400020936 | Potato | cytosol | 20.29 | 18.04 |
| PGSC0003DMT400091785 | Potato | cytosol, mitochondrion, plastid | 8.12 | 17.72 |
| PGSC0003DMT400021985 | Potato | nucleus | 19.71 | 16.31 |
| PGSC0003DMT400007346 | Potato | nucleus | 19.13 | 15.24 |
| HORVU6Hr1G007080.1 | Barley | cytosol | 3.77 | 14.94 |
| PGSC0003DMT400046591 | Potato | extracellular | 19.71 | 14.91 |
| PGSC0003DMT400059324 | Potato | cytosol | 20.0 | 14.38 |
| PGSC0003DMT400007391 | Potato | cytosol | 4.64 | 11.94 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400013635 | EnsemblPlantsGene:PGSC0003DMG400005330 | EntrezGene:102590758 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF29 |
| PFAM:PF01344 | PGSC:PGSC0003DMG400005330 | RefSeq:XP_006366670.1 | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI000296B96D |
| UniProt:M1A342 | MapMan:35.1 | : | : | : | : |
Description
Protein AFR [Source:PGSC_GENE;Acc:PGSC0003DMG400005330]
Coordinates
chr6:-:1250211..1253182
Molecular Weight (calculated)
38474.3 Da
IEP (calculated)
6.835
GRAVY (calculated)
0.025
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MTALIEGLPD AVAIRCLARV PFYLHPKLEL VSHSWRAAIQ SAELFKARQE VNSSEEFLCV SAFEPENLWE LYDPTHDLWI TLPILPSNIS HFARFSVVST
101: AGKLFVLGGG SDAVDPLTGD QDGIFATDKV WSYDPATRAW NPRASMLVPR AMFACCVLDG KIVAAGGFTN RRKSICNAEI YDPETDVWVQ LPDLHHAHNS
201: ACSGVVFGGK VHVLHKGLST IQVLENFKQG WIAHEYSWLQ GPMTVVRENL YVMSNWFIYK QEGELRRMIV SASDFRRRIG YAMIGLGDDI YIVGGVNGPD
301: YWNCSVKVLS DVDVLTLGSE RPAWRKVAPL TRCKGTILGC TQLRI
101: AGKLFVLGGG SDAVDPLTGD QDGIFATDKV WSYDPATRAW NPRASMLVPR AMFACCVLDG KIVAAGGFTN RRKSICNAEI YDPETDVWVQ LPDLHHAHNS
201: ACSGVVFGGK VHVLHKGLST IQVLENFKQG WIAHEYSWLQ GPMTVVRENL YVMSNWFIYK QEGELRRMIV SASDFRRRIG YAMIGLGDDI YIVGGVNGPD
301: YWNCSVKVLS DVDVLTLGSE RPAWRKVAPL TRCKGTILGC TQLRI
001: MSGLLDGIPE AVALRCLAHV PLHLHPNLEL VSRSWRAAIR SHELFRVRKE LRSSEHLLCV CAFDPENIWQ VYSPNCDRWL TLPLLPSRIR HLAHFGAVTT
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI
Arabidopsis Description
SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.