Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G195800.1 | Wheat | cytosol | 87.66 | 76.49 |
| TraesCS6B01G243200.1 | Wheat | cytosol | 87.66 | 76.49 |
| TraesCS7B01G234000.1 | Wheat | cytosol | 81.82 | 75.9 |
| Os10t0388200-01 | Rice | cytosol | 77.92 | 69.16 |
| OQU82118 | Sorghum | cytosol | 77.6 | 68.68 |
| Zm00001d014338_P001 | Maize | cytosol | 77.27 | 68.39 |
| GSMUA_Achr6P24370_001 | Banana | cytosol | 66.88 | 59.37 |
| VIT_07s0151g00770.t01 | Wine grape | cytosol | 58.12 | 51.88 |
| PGSC0003DMT400049746 | Potato | cytosol | 54.87 | 48.99 |
| Solyc09g065400.1.1 | Tomato | cytosol | 54.87 | 48.99 |
| KRH32035 | Soybean | cytosol | 54.55 | 48.84 |
| KRH67237 | Soybean | cytosol | 54.55 | 48.7 |
| KRH71403 | Soybean | cytosol | 54.22 | 48.55 |
| Solyc06g008690.1.1 | Tomato | cytosol | 53.9 | 48.12 |
| KRG95556 | Soybean | cytosol | 53.57 | 47.83 |
| PGSC0003DMT400013635 | Potato | cytosol | 53.57 | 47.83 |
| CDY22982 | Canola | cytosol | 53.57 | 47.69 |
| Bra001739.1-P | Field mustard | cytosol | 53.25 | 47.4 |
| CDX82306 | Canola | cytosol | 53.25 | 47.4 |
| AT3G63220.2 | Thale cress | cytosol | 52.92 | 46.31 |
| CDX99248 | Canola | cytosol | 50.97 | 45.11 |
| Bra037535.1-P | Field mustard | cytosol | 50.65 | 44.96 |
| CDY58259 | Canola | cytosol | 50.0 | 44.38 |
| CDY18573 | Canola | cytosol | 49.68 | 43.97 |
| TraesCS4A01G493800.1 | Wheat | cytosol | 16.23 | 19.92 |
| TraesCS4A01G487800.1 | Wheat | cytosol | 16.23 | 19.38 |
| TraesCS3A01G446400.1 | Wheat | cytosol, plastid | 22.08 | 17.66 |
| TraesCS6A01G037900.1 | Wheat | cytosol | 20.78 | 17.63 |
| TraesCS5A01G544300.1 | Wheat | extracellular, plasma membrane | 15.58 | 16.78 |
| TraesCS2A01G280900.1 | Wheat | mitochondrion | 20.78 | 16.71 |
| TraesCS7A01G004600.1 | Wheat | cytosol | 18.18 | 15.38 |
| HORVU6Hr1G007080.1 | Barley | cytosol | 4.22 | 14.94 |
| TraesCS4A01G492300.1 | Wheat | cytosol, golgi, plastid | 17.86 | 14.29 |
| TraesCS4A01G489600.1 | Wheat | cytosol | 17.53 | 14.29 |
| TraesCS7A01G496600.1 | Wheat | cytosol | 17.86 | 14.29 |
| TraesCS4A01G472100.1 | Wheat | cytosol | 21.1 | 14.19 |
| TraesCS4A01G489300.1 | Wheat | cytosol | 17.53 | 14.17 |
| TraesCS7A01G020100.1 | Wheat | cytosol, plastid | 20.78 | 14.04 |
| TraesCS2A01G499700.1 | Wheat | cytosol, mitochondrion | 17.21 | 13.32 |
| TraesCS4A01G016200.1 | Wheat | cytosol | 18.51 | 13.23 |
| TraesCS6A01G306000.1 | Wheat | cytosol | 17.86 | 12.94 |
| TraesCS2A01G462600.1 | Wheat | cytosol | 18.83 | 12.92 |
| TraesCS4A01G020200.1 | Wheat | cytosol | 17.86 | 12.79 |
| TraesCS3A01G534600.1 | Wheat | cytosol | 17.86 | 12.76 |
| TraesCS6A01G175700.1 | Wheat | plastid | 17.21 | 12.53 |
| TraesCS4A01G491100.1 | Wheat | cytosol | 16.88 | 9.89 |
| TraesCS4A01G493200.1 | Wheat | cytosol, plasma membrane | 13.96 | 9.07 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G211500.1 | EnsemblPlantsGene:TraesCS6A01G211500 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF29 | PFAM:PF01344 |
| PFAM:PF13418 | SMART:SM00612 | SUPFAM:SSF117281 | TMHMM:TMhelix | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr6A:+:384687635..384688650
Molecular Weight (calculated)
33880.1 Da
IEP (calculated)
8.549
GRAVY (calculated)
0.037
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MKWLSSALHV SRLYPILFFS WFAALGEHLF AMGSFSMFGI RLGRRKNCYI RNIARFGVAS VAGKLYVIGG GSDRVDPLTG DHDTIFASNE VWSYDPLHRL
101: WAQRAPMLVA RAMFACYALD GKIIVAGGFT NCRKSISEAE IYDPEADTWK SLPDLRQAHP SACSGLVFKD KMHVLHKGIS TVQILEDGGN YWAVEDYSWL
201: QGPMAMVGGE LYVLSNSCIR KQHGENFPDK MVPCASGFQS RIGFGMIGLG DSICLFGGVI GPGPRNQCIK PLSDVDILNV ASERPTWRQG SPMTRCRGSI
301: AGCALLKI
101: WAQRAPMLVA RAMFACYALD GKIIVAGGFT NCRKSISEAE IYDPEADTWK SLPDLRQAHP SACSGLVFKD KMHVLHKGIS TVQILEDGGN YWAVEDYSWL
201: QGPMAMVGGE LYVLSNSCIR KQHGENFPDK MVPCASGFQS RIGFGMIGLG DSICLFGGVI GPGPRNQCIK PLSDVDILNV ASERPTWRQG SPMTRCRGSI
301: AGCALLKI
001: MSGLLDGIPE AVALRCLAHV PLHLHPNLEL VSRSWRAAIR SHELFRVRKE LRSSEHLLCV CAFDPENIWQ VYSPNCDRWL TLPLLPSRIR HLAHFGAVTT
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI
Arabidopsis Description
SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.