Factsheet for TraesCS4A01G472100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G020100.1	Wheat	cytosol, plastid	92.79	93.2
HORVU7Hr1G002140.2	Barley	mitochondrion	91.27	87.63
Os10t0363600-01	Rice	cytosol, plastid	72.27	69.68
KXG24326	Sorghum	cytosol	67.9	66.45
Zm00001d049632_P001	Maize	cytosol	64.41	61.59
KRH18847	Soybean	cytosol	57.21	55.16
Solyc01g104980.2.1	Tomato	cytosol, plastid	56.77	54.74
VIT_12s0055g00910.t01	Wine grape	cytosol	57.21	54.7
KRH62415	Soybean	cytosol	32.75	54.35
PGSC0003DMT400032733	Potato	cytosol, plastid	55.9	53.89
KRH16647	Soybean	cytosol, plastid	56.11	53.88
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	56.11	53.88
KRH53131	Soybean	cytosol	53.49	51.47
CDY00415	Canola	mitochondrion	24.02	51.4
KRH42190	Soybean	cytosol, plastid	53.93	51.35
KRH58301	Soybean	cytosol	53.93	51.35
KRH72270	Soybean	cytosol	14.41	50.38
AT1G22040.1	Thale cress	plastid	50.44	48.63
CDY01300	Canola	cytosol	23.58	48.21
Bra012304.1-P	Field mustard	cytosol	46.29	45.4
KRH55297	Soybean	cytosol	26.86	41.98
CDY01301	Canola	cytosol	14.19	41.4
GSMUA_Achr2P22090_001	Banana	cytosol	34.06	41.38
CDY04697	Canola	cytosol	19.87	40.81
CDY30645	Canola	nucleus	19.87	40.81
Bra031360.1-P	Field mustard	plastid	20.31	38.11
TraesCS2A01G499700.1	Wheat	cytosol, mitochondrion	22.93	26.38
TraesCS6A01G175700.1	Wheat	plastid	24.24	26.24
TraesCS4A01G020200.1	Wheat	cytosol	23.8	25.35
TraesCS5A01G544300.1	Wheat	extracellular, plasma membrane	15.72	25.17
TraesCS7A01G496600.1	Wheat	cytosol	20.96	24.94
TraesCS6A01G037900.1	Wheat	cytosol	19.65	24.79
TraesCS3A01G534600.1	Wheat	cytosol	22.71	24.13
TraesCS3A01G446400.1	Wheat	cytosol, plastid	19.65	23.38
TraesCS2A01G280900.1	Wheat	mitochondrion	19.21	22.98
TraesCS4A01G493800.1	Wheat	cytosol	12.45	22.71
TraesCS4A01G487800.1	Wheat	cytosol	12.23	21.71
TraesCS7A01G004600.1	Wheat	cytosol	17.03	21.43
TraesCS6A01G211500.1	Wheat	extracellular, golgi	14.19	21.1
TraesCS4A01G016200.1	Wheat	cytosol	19.65	20.88
TraesCS4A01G492300.1	Wheat	cytosol, golgi, plastid	17.03	20.26
TraesCS6A01G306000.1	Wheat	cytosol	18.78	20.24
TraesCS4A01G489300.1	Wheat	cytosol	16.38	19.68
TraesCS4A01G489600.1	Wheat	cytosol	16.16	19.58
TraesCS2A01G462600.1	Wheat	cytosol	18.56	18.93
TraesCS4A01G491100.1	Wheat	cytosol	18.56	16.16
TraesCS4A01G493200.1	Wheat	cytosol, plasma membrane	14.41	13.92

Protein Annotations

EnsemblPlants:TraesCS4A01G472100.1	EnsemblPlantsGene:TraesCS4A01G472100	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PANTHER:PTHR24414	PANTHER:PTHR24414:SF39	PFAM:PF00646	PFAM:PF01344	PFscan:PS50181	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4A:-:732511718..732513094

Molecular Weight (calculated)

49795.1 Da

IEP (calculated)

8.190

GRAVY (calculated)

-0.064

Length

458 amino acids

Sequence
(BLAST)

001: MGASLSFPNN GKQTLEHGEA SKPGSSKKLR HGHYHPRLIP DLPDEISLQI LARMPRVRYL SSKMVSRSWK AAITGVELYR VRKELGVDEE WIYILTKAAD
101: GKLSWHAFDP LCSRWQRLPL MPGVARGGSR LGGLVSAGIR ISGAIRGLLR QEDWLDKIPF CACAVGTIDG CLYVLGGFSR ATAIKSVWKY DPAVNLWQEV
201: SSMSTARAFG RTGLLNNKLY VVGGVIREET GLAPLQSAEV FDPATGIWAD VPNMPFSKAQ TLPTAFLADL LKPVATGIVS FGGKLYVPQS LYSWPFFVDV
301: GGEVFDPATD SWSEMPVGLS EGWPGRQAGT KLSAVVNGDL YALEPPTCSD GGKIKTYDPK EDTWKAVVGQ VPVGDFAESK CPYLLAGFLG KLHLVIKDMN
401: NMISILQTDA LKPMDATGST CQNPDVSWPL EQGNDVWRMV GSKKFAAAEL VSCQALSI

Best Arabidopsis Sequence Match ( AT1G22040.1 )
(BLAST)

001: MGSVMSLSCS KRKATSQDVE CSSESRKRRK ISSENDEEEC CRLIPSLPDE LSIQILARLP RICYSSVRLV SRRWRSAVST SEVYSLRKEL GRTEEWLYVL
101: TKGHEDKLLW YALDPVSTKW QRLPPMPVVV YEEESRKSLS GLWNMITPSF NVGAIVRSFL GRRDSSEQMP FCGCAIGAVD GGLYVIGGLS RSKTVSCVWR
201: FDPILNSWSE VSSMLASRAY SKTGVLNKKL YVVGGVDRGR GGLSPLQSAE VYDPSTDAWS EVPSMPFSKA QVLPNAFLAD LLKPIATGMT CYNGRLCVPQ
301: SLYSWPFFVD VGGEVYDPET NLWVEMPSGM GEGWPARQAG TKLSVVVDGE LYAFDPSSSM ENGKIKVYDQ KEDTWKVVIG EVPVYDLTDS ESPYLLAGFH
401: GKLHFITRDP NHNVTVLRAD VPNIPVSSSS SSSSSVSIPH LKTNAPNKSD TVTWKLIATK DFGAAELVSC QVIDI

Arabidopsis Description

F-box/kelch-repeat protein At1g22040 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.