Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G496600.1 | Wheat | cytosol | 98.6 | 73.25 |
| TraesCS7D01G483900.1 | Wheat | cytosol | 95.1 | 71.02 |
| EER90147 | Sorghum | cytosol | 88.81 | 64.63 |
| Os06t0655500-01 | Rice | cytosol | 86.01 | 64.06 |
| Zm00001d046921_P001 | Maize | cytosol | 87.76 | 63.71 |
| Zm00001d046922_P001 | Maize | cytosol | 85.66 | 63.64 |
| GSMUA_AchrUn_... | Banana | cytosol | 48.6 | 38.94 |
| KRH61941 | Soybean | plastid | 39.86 | 32.48 |
| VIT_04s0008g02380.t01 | Wine grape | cytosol, peroxisome, plastid | 40.21 | 31.08 |
| KRH52601 | Soybean | extracellular, golgi | 39.51 | 28.32 |
| Bra007843.1-P | Field mustard | cytosol | 34.97 | 26.88 |
| CDY34765 | Canola | cytosol | 34.97 | 26.88 |
| CDX76807 | Canola | cytosol | 34.62 | 26.83 |
| AT2G24540.1 | Thale cress | cytosol | 33.92 | 26.08 |
| TraesCS2A01G499700.1 | Wheat | cytosol, mitochondrion | 34.62 | 24.87 |
| TraesCS6A01G175700.1 | Wheat | plastid | 28.32 | 19.15 |
| TraesCS4A01G487800.1 | Wheat | cytosol | 15.73 | 17.44 |
| TraesCS4A01G493800.1 | Wheat | cytosol | 14.34 | 16.33 |
| TraesCS4A01G472100.1 | Wheat | cytosol | 25.17 | 15.72 |
| TraesCS6A01G211500.1 | Wheat | extracellular, golgi | 16.78 | 15.58 |
| TraesCS7A01G020100.1 | Wheat | cytosol, plastid | 24.83 | 15.57 |
| TraesCS2A01G280900.1 | Wheat | mitochondrion | 19.58 | 14.62 |
| TraesCS3A01G534600.1 | Wheat | cytosol | 21.33 | 14.15 |
| TraesCS7A01G004600.1 | Wheat | cytosol | 17.83 | 14.01 |
| TraesCS4A01G020200.1 | Wheat | cytosol | 20.98 | 13.95 |
| TraesCS3A01G446400.1 | Wheat | cytosol, plastid | 18.53 | 13.77 |
| TraesCS4A01G492300.1 | Wheat | cytosol, golgi, plastid | 18.53 | 13.77 |
| TraesCS4A01G489600.1 | Wheat | cytosol | 18.18 | 13.76 |
| TraesCS4A01G489300.1 | Wheat | cytosol | 18.18 | 13.65 |
| TraesCS6A01G037900.1 | Wheat | cytosol | 16.78 | 13.22 |
| TraesCS4A01G016200.1 | Wheat | cytosol | 17.48 | 11.6 |
| TraesCS2A01G462600.1 | Wheat | cytosol | 16.08 | 10.24 |
| TraesCS6A01G306000.1 | Wheat | cytosol | 15.04 | 10.12 |
| TraesCS4A01G493200.1 | Wheat | cytosol, plasma membrane | 14.34 | 8.65 |
| TraesCS4A01G491100.1 | Wheat | cytosol | 15.73 | 8.56 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G544300.1 | EnsemblPlantsGene:TraesCS5A01G544300 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF31 | SEG:seg |
| SignalP:SignalP-noTM | SMART:SM00612 | SUPFAM:SSF117281 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5A:+:699761269..699765902
Molecular Weight (calculated)
30237.8 Da
IEP (calculated)
5.047
GRAVY (calculated)
-0.013
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSLSLPFLF AFAFDPVSRR LQCQALDPFS RRWLLLPPVP CGTAAGSFAV VGLPARGEIY VIGGVEEGGD KAVSSVAVYS AATNGWGQVA GMRTARGYMA
101: AGEVGGRVVV ASEDGEAEVF DPEAGRWSPA APRGGAAVAR YDAAAAGGKL YVTEGWAWPF ERAPRGAGWT GSCAVSGGRM YIVAEYGEWR LKRYDEPRDE
201: WRMVAGGGVP QEVRRPHVVA GQLEEVGGGR RRIYVVCAGL DVAVGTVVSA ANHGAGTEEE RVEWEVVKGP EEFVGLAPCN AQVLYA
101: AGEVGGRVVV ASEDGEAEVF DPEAGRWSPA APRGGAAVAR YDAAAAGGKL YVTEGWAWPF ERAPRGAGWT GSCAVSGGRM YIVAEYGEWR LKRYDEPRDE
201: WRMVAGGGVP QEVRRPHVVA GQLEEVGGGR RRIYVVCAGL DVAVGTVVSA ANHGAGTEEE RVEWEVVKGP EEFVGLAPCN AQVLYA
001: MAEQETTSNI NTINDQAEEE TRTKSQPLIS GLPNDIAELC LLRLPYPYHA LYRSVSSSWN KTITNPRFLF SKQSLSISSP YLFVFAFNKS TARIQWQSLD
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV
Arabidopsis Description
AFRF-box protein AFR [Source:UniProtKB/Swiss-Prot;Acc:Q8LAW2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.