Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0009g01910.t01 | |
| VIT_08s0040g00470.t01 | |
| VIT_18s0001g14860.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24540.1 | VIT_06s0009g01910.t01 | AT2G41090.1 | 17360592 |
| AT2G24540.1 | VIT_08s0040g00470.t01 | AT2G41090.1 | 17360592 |
| AT2G24540.1 | VIT_18s0001g14860.t01 | AT5G42190.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76807 | Canola | cytosol | 54.32 | 54.47 |
| GSMUA_AchrUn_... | Banana | cytosol | 51.89 | 53.78 |
| Bra007843.1-P | Field mustard | cytosol | 53.78 | 53.49 |
| CDY34765 | Canola | cytosol | 53.78 | 53.49 |
| AT2G24540.1 | Thale cress | cytosol | 53.51 | 53.23 |
| KRH61941 | Soybean | plastid | 44.59 | 47.01 |
| KRH52601 | Soybean | extracellular, golgi | 50.54 | 46.87 |
| TraesCS7D01G483900.1 | Wheat | cytosol | 42.16 | 40.73 |
| Os06t0655500-01 | Rice | cytosol | 42.16 | 40.62 |
| VIT_10s0003g03730.t01 | Wine grape | cytosol | 25.14 | 40.43 |
| TraesCS7A01G496600.1 | Wheat | cytosol | 41.89 | 40.26 |
| TraesCS5A01G544300.1 | Wheat | extracellular, plasma membrane | 31.08 | 40.21 |
| Zm00001d046921_P001 | Maize | cytosol | 42.7 | 40.1 |
| EER90147 | Sorghum | cytosol | 42.43 | 39.95 |
| Zm00001d046922_P001 | Maize | cytosol | 41.08 | 39.48 |
| VIT_15s0046g02790.t01 | Wine grape | cytosol | 19.73 | 26.45 |
| VIT_07s0151g00770.t01 | Wine grape | cytosol | 23.51 | 25.22 |
| VIT_15s0046g02710.t01 | Wine grape | cytosol | 24.32 | 25.07 |
| VIT_18s0001g04730.t01 | Wine grape | cytosol, plastid | 28.38 | 22.01 |
| VIT_12s0055g00910.t01 | Wine grape | cytosol | 28.11 | 21.71 |
| VIT_06s0004g00860.t01 | Wine grape | cytosol | 24.86 | 21.05 |
| VIT_01s0010g03320.t01 | Wine grape | cytosol | 21.89 | 21.04 |
| VIT_11s0016g05050.t01 | Wine grape | cytosol | 24.32 | 21.03 |
| VIT_06s0004g02980.t01 | Wine grape | cytosol | 18.92 | 19.23 |
| VIT_17s0000g05920.t01 | Wine grape | cytosol | 21.35 | 17.83 |
| VIT_16s0039g01470.t01 | Wine grape | cytosol | 17.84 | 17.19 |
| VIT_14s0068g02150.t01 | Wine grape | cytosol | 18.11 | 14.05 |
| VIT_01s0026g02080.t01 | Wine grape | nucleus | 19.19 | 13.12 |
Protein Annotations
| EntrezGene:100264536 | wikigene:100264536 | Gene3D:2.120.10.80 | MapMan:35.1 | ProteinID:CCB46639 | ProteinID:CCB46639.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | UniProt:F6H3A2 | EMBL:FN595231 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009585 | GO:GO:0009605 |
| GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010017 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller |
| InterPro:Kelch_1 | EntrezGene:LOC100264536 | wikigene:LOC100264536 | PFAM:PF00646 | PFAM:PF01344 | PANTHER:PTHR24414 |
| PANTHER:PTHR24414:SF31 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI000210A06E |
| ArrayExpress:VIT_04s0008g02380 | EnsemblPlantsGene:VIT_04s0008g02380 | EnsemblPlants:VIT_04s0008g02380.t01 | unigene:Vvi.17321 | RefSeq:XP_002282492 | RefSeq:XP_002282492.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:1953669..1957566
Molecular Weight (calculated)
40882.6 Da
IEP (calculated)
6.310
GRAVY (calculated)
-0.138
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRLRSSSNS QENDGNSDEL IPGLPEEIAE LCLLHVPYPY QALARSVSSS WNKAITDPSF LLSKKILSLS QPYLFVFASS KSTSRIQWQA LDPRSGRWFV
101: LPPMPCSAAA CPPGLACASL PEDGKLFVLG DLRSDGTSLH TTIMYRASTN QWSLASPMRT PRTFFAAGSI NGKIFAAGGR GLGVEDSIPT VERYDPVSDT
201: WAAVAKMRSG LARYDAAVVG NKLYVTEGWT WPFSFSPRGG VYDGDRDTWQ EMSLGMREGW TGISVVLRNR LFVLSEYGDC RMKVYVPDHD TWHPVGGGRF
301: PCEALQRPFA VSTMEDRIYV VSRGLHVAVG KVHETVEASQ SHHLWVEWEV MAAPIAFSDF SPCNCIELDV
101: LPPMPCSAAA CPPGLACASL PEDGKLFVLG DLRSDGTSLH TTIMYRASTN QWSLASPMRT PRTFFAAGSI NGKIFAAGGR GLGVEDSIPT VERYDPVSDT
201: WAAVAKMRSG LARYDAAVVG NKLYVTEGWT WPFSFSPRGG VYDGDRDTWQ EMSLGMREGW TGISVVLRNR LFVLSEYGDC RMKVYVPDHD TWHPVGGGRF
301: PCEALQRPFA VSTMEDRIYV VSRGLHVAVG KVHETVEASQ SHHLWVEWEV MAAPIAFSDF SPCNCIELDV
001: MAEQETTSNI NTINDQAEEE TRTKSQPLIS GLPNDIAELC LLRLPYPYHA LYRSVSSSWN KTITNPRFLF SKQSLSISSP YLFVFAFNKS TARIQWQSLD
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV
101: LASGRWFVLP PMPNSFTKIS SPHALSCASM PRQGKLFVLG GGDVNRSAVV YTALTNRWSC ISPMMSPRTY FVSGNVNGKI MAVGGSVGGN GEATTEVESY
201: DPDNDTWTVV KKLPMVLAKY DSAVIGKEMC VTEGWAWPFM FPPMGQVYDS DEGTWREMSG GMKEGWTGVS VVIRDRLFVI SEHGDFPMKV YCSDDDTWRY
301: VSGEKLQGEK MRRPFAVTGA DDRVFVVASG INVAEGRVSE GQNGDFSVEW RMVSSPKSSI QFSPASCHVL YV
Arabidopsis Description
AFRF-box protein AFR [Source:UniProtKB/Swiss-Prot;Acc:Q8LAW2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.