Factsheet for VIT_01s0010g03320.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42654	Soybean	cytosol	79.48	78.87
KRH31463	Soybean	cytosol	78.7	78.7
KRG97442	Soybean	cytosol, nucleus, peroxisome	75.06	78.11
CDY12647	Canola	cytosol	65.19	69.34
Bra033998.1-P	Field mustard	cytosol	64.68	68.78
GSMUA_Achr8P28270_001	Banana	cytosol	66.75	66.93
CDY01812	Canola	cytosol	63.64	65.68
Os02t0504900-01	Rice	cytosol	65.45	65.45
Bra004227.1-P	Field mustard	cytosol	63.12	65.15
Zm00001d016553_P001	Maize	cytosol	61.56	65.11
AT1G67480.1	Thale cress	cytosol, mitochondrion	63.38	64.89
CDX96091	Canola	cytosol	62.86	64.88
EES06854	Sorghum	cytosol	64.16	64.49
GSMUA_Achr3P16120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	63.64	64.14
HORVU3Hr1G096780.1	Barley	cytosol, plastid	62.86	62.86
TraesCS3D01G439000.1	Wheat	cytosol	62.34	62.5
Os04t0380300-01	Rice	plastid	60.52	62.13
TraesCS3A01G446400.1	Wheat	cytosol, plastid	62.08	62.08
GSMUA_Achr6P20750_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	62.6	61.79
TraesCS3B01G481500.1	Wheat	cytosol, plastid	61.04	61.2
CDY64883	Canola	golgi, plastid	63.64	59.61
OQU81371	Sorghum	mitochondrion	55.58	56.76
TraesCS2A01G280900.1	Wheat	mitochondrion	56.36	56.66
TraesCS2D01G279700.1	Wheat	mitochondrion	56.36	56.66
TraesCS2B01G298300.1	Wheat	mitochondrion	56.1	56.4
HORVU2Hr1G068790.2	Barley	cytosol	55.06	55.21
VIT_15s0046g02790.t01	Wine grape	cytosol	19.22	26.81
VIT_07s0151g00770.t01	Wine grape	cytosol	22.6	25.22
VIT_11s0016g05050.t01	Wine grape	cytosol	26.23	23.6
VIT_06s0004g00860.t01	Wine grape	cytosol	25.97	22.88
VIT_15s0046g02710.t01	Wine grape	cytosol	21.3	22.84
VIT_04s0008g02380.t01	Wine grape	cytosol, peroxisome, plastid	21.04	21.89
VIT_06s0004g02980.t01	Wine grape	cytosol	20.26	21.43
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	25.71	20.75
VIT_16s0039g01470.t01	Wine grape	cytosol	20.52	20.57
VIT_12s0055g00910.t01	Wine grape	cytosol	24.42	19.62
VIT_10s0003g03730.t01	Wine grape	cytosol	11.69	19.57
VIT_17s0000g05920.t01	Wine grape	cytosol	22.08	19.19
VIT_14s0068g02150.t01	Wine grape	cytosol	18.96	15.3
VIT_01s0026g02080.t01	Wine grape	nucleus	21.04	14.97

Protein Annotations

EntrezGene:100267636	wikigene:100267636	Gene3D:2.120.10.80	MapMan:35.1	ProteinID:CBI27625	ProteinID:CBI27625.3
UniProt:D7TAV2	InterPro:F-box_dom	EMBL:FN595754	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031463	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EntrezGene:LOC100267636
wikigene:LOC100267636	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24412	PANTHER:PTHR24412:SF377	SMART:SM00612
SUPFAM:SSF117281	TIGR:TC52425	UniParc:UPI00015CD151	ArrayExpress:VIT_01s0010g03320	EnsemblPlantsGene:VIT_01s0010g03320	EnsemblPlants:VIT_01s0010g03320.t01
unigene:Vvi.3552	RefSeq:XP_002272745	RefSeq:XP_002272745.1	:	:	:

Description

No Description!

Coordinates

chr1:-:20661352..20663844

Molecular Weight (calculated)

42381.1 Da

IEP (calculated)

7.771

GRAVY (calculated)

-0.118

Length

385 amino acids

Sequence
(BLAST)

001: MPGIVAGKKR FTQSNMCLSN SVQQDTLTLS KSNPCLTSQF ADDSYGPILP GLPDDVAKYC LALVPRSNFP AMGGVSKKWR SFIRSKEFIT VRKLAGMLEE
101: WLYVLTMDAE GKGSHWEVLD CLGHKHQLLP PMPGPVKTGF EVVVLNGKLL VMAGCSVVGR TGSASADVYQ YDSCLNSWSK LANMNVARYD FACAEVNGMV
201: YAVGGYGADG DSLSSAEMYD ADADKWILIE SLRRPRYGCF ACGFEGKLYV MGGRSSFTIG NSRFVDVYNP ERHTWCEMKN GRVMVTAHAV LGKKLFCMEW
301: KNQRKLAIFN PEDNSWKMVP VPLTGSSSIG FRFGILEGKL LLFSLEEDPG YRTLLYDPDA APGSEWQTSE IKPSGSCLCS VTIKA

Best Arabidopsis Sequence Match ( AT1G67480.3 )
(BLAST)

001: MQAFALSGKK RIVNHGMCFS KGNLDLGSRL SENFMDDPLI PGLPDDVAKQ CLALVPRARF PSMGSVCKKW RFVVQSKEFI TVRRLAGMLE EWLYVLTMNA
101: GGKDNRWEVM DCLGQKLSSL PPMPGPAKTG FKVVVVDGKL LVIAGCCMIN GSLVASADVY QYDTCLNSWS RLADLEVARY DFACAEVNGH VYVVGGHGVD
201: GESLSSAEVY DPETCTWTFI ESLRRPRWGC FASAFNGKLY VMGGRSNFTI GNSKLLDVYN TQCGSWHGSK NGLTMVTAHV EVGKKLFCID WKNHRKMSVF
301: NAEDETWEVV ALPLSGSSRA GFQFGKLSGK LLLFSSQEET GQCTLLYDPD ASPGTQWKTS EIKLSGSCVC SVTITA

Arabidopsis Description

F-box/kelch-repeat protein At1g67480 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAG8]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.