Factsheet for Bra001739.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82306	Canola	cytosol	99.42	99.42
Bra037535.1-P	Field mustard	cytosol	87.86	87.61
AT3G63220.2	Thale cress	cytosol	85.84	84.38
VIT_07s0151g00770.t01	Wine grape	cytosol	72.54	72.75
Solyc09g065400.1.1	Tomato	cytosol	71.1	71.3
PGSC0003DMT400049746	Potato	cytosol	70.81	71.01
KRH67237	Soybean	cytosol	69.65	69.86
KRH32035	Soybean	cytosol	68.79	69.19
KRH71403	Soybean	cytosol	68.79	69.19
KRG95556	Soybean	cytosol	68.79	68.99
Solyc06g008690.1.1	Tomato	cytosol	65.03	65.22
PGSC0003DMT400013635	Potato	cytosol	65.03	65.22
OQU82118	Sorghum	cytosol	58.38	58.05
GSMUA_Achr6P24370_001	Banana	cytosol	58.09	57.93
Os10t0388200-01	Rice	cytosol	58.09	57.93
TraesCS6B01G243200.1	Wheat	cytosol	58.96	57.79
TraesCS6D01G195800.1	Wheat	cytosol	58.67	57.51
Zm00001d014338_P001	Maize	cytosol	57.8	57.47
TraesCS7B01G234000.1	Wheat	cytosol	54.91	57.23
TraesCS6A01G211500.1	Wheat	extracellular, golgi	47.4	53.25
Bra026073.1-P	Field mustard	cytosol	15.32	25.6
Bra007843.1-P	Field mustard	cytosol	26.01	24.19
Bra003447.1-P	Field mustard	cytosol	24.28	23.4
Bra033998.1-P	Field mustard	cytosol	23.7	22.65
Bra002471.1-P	Field mustard	cytosol	23.41	21.6
Bra005497.1-P	Field mustard	cytosol	8.96	21.53
Bra004227.1-P	Field mustard	cytosol	22.54	20.91
Bra032358.1-P	Field mustard	mitochondrion, plastid	23.99	20.85
Bra012304.1-P	Field mustard	cytosol	26.3	19.49
Bra010942.1-P	Field mustard	plastid	19.08	19.13
Bra037989.1-P	Field mustard	cytosol, plastid	23.41	18.62
Bra008155.1-P	Field mustard	cytosol	15.9	18.52
Bra015905.1-P	Field mustard	cytosol	21.68	18.2
Bra003796.1-P	Field mustard	cytosol	21.97	17.8
Bra030872.1-P	Field mustard	cytosol	21.97	17.47
Bra011908.1-P	Field mustard	mitochondrion	21.68	17.24
Bra010784.1-P	Field mustard	cytosol	19.08	16.62
Bra026838.1-P	Field mustard	nucleus	19.36	16.46
Bra016297.1-P	Field mustard	cytosol	20.23	16.43
Bra031360.1-P	Field mustard	plastid	10.98	15.57
Bra032983.1-P	Field mustard	cytosol	18.21	15.33
Bra030046.1-P	Field mustard	cytosol, plastid	15.61	15.3
Bra017407.1-P	Field mustard	nucleus, plastid	19.36	15.26
Bra026575.1-P	Field mustard	nucleus	19.08	14.86
Bra024801.1-P	Field mustard	nucleus	19.08	14.57
Bra025251.1-P	Field mustard	cytosol	18.21	14.55
HORVU6Hr1G007080.1	Barley	cytosol	3.47	13.79
Bra034944.1-P	Field mustard	cytosol	15.9	13.45
Bra032052.1-P	Field mustard	cytosol	6.65	13.07
Bra030045.1-P	Field mustard	cytosol	16.47	12.1

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra001739	EnsemblPlants:Bra001739.1	EnsemblPlants:Bra001739.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4CC09	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414
PANTHER:PTHR24414:SF29	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00025404EE
SEG:seg	:	:	:	:	:

Description

AT3G63220 (E=1e-168) | kelch repeat-containing F-box family protein

Coordinates

chrA03:+:18189204..18190244

Molecular Weight (calculated)

38024.8 Da

IEP (calculated)

6.722

GRAVY (calculated)

-0.037

Length

346 amino acids

Sequence
(BLAST)

001: MSGLLEGIPD AVALRCLAHV PLHHHPNLEL VSRSWRSAIR SDELFKVRSE EKSSESLLCV CAFDPENTWQ VYSPSCNRWL TLPLLPSRIR QLAHFGAVTA
101: AGKLFVLGGG SDAVDPLTGD HDGTFATDEV WCYDFVKRRW TQRASMLVPR SMFACCVLDG KIVVAGGFTT CRKSISGAEM YDPESDVWAS IPDLHRTHNS
201: ACSGLVVKGK VHVLHKGLSS VQVLESVKVG WAVKEYGWPQ GPMAVVEDVP YVMSHGVVYK QEEDDTWKMV ASASEFKPRI GMAMTSLSDE VLLVGGVIGP
301: DRDNWDIKPL SDVDVLSVGS DRPVWRKVAP MTKCRGTVLG CTQLTI

Best Arabidopsis Sequence Match ( AT3G63220.2 )
(BLAST)

001: MCYRQETMSG LLDGIPEAVA LRCLAHVPLH LHPNLELVSR SWRAAIRSHE LFRVRKELRS SEHLLCVCAF DPENIWQVYS PNCDRWLTLP LLPSRIRHLA
101: HFGAVTTAGM LFVLGGGSDA VSPVTGDHDG TFATDQVWSY DFVQRQWTPR ASMLVPRAMF ACCVLQGKIV VAGGFTTCRK SISGAEMYDP ENDVWTSIPD
201: LHQTHNSACS GLVVNGKVHV LHKGLSTVQV LESVKLGWDV KDYGWPQGPM VVVEDVLYVM SHGLVFKQEG DTWKMVASAS EFKRRIGMAM TSLSDEVLIV
301: GGVIGPDRLN WDIKPLSDVD ALTVGNDRPA WRSVAPMTRC RGTILGCTQL TI

Arabidopsis Description

SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.