Factsheet for Bra030045.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15708	Canola	cytosol	67.09	92.13
AT1G27420.1	Thale cress	cytosol, plastid	48.62	66.19
Bra010942.1-P	Field mustard	plastid	47.98	65.51
Bra030046.1-P	Field mustard	cytosol, plastid	42.68	56.94
CDY03921	Canola	cytosol, extracellular, plasma membrane	42.25	56.37
Bra033998.1-P	Field mustard	cytosol	27.81	36.19
Bra004227.1-P	Field mustard	cytosol	27.39	34.58
Bra011908.1-P	Field mustard	mitochondrion	17.83	19.31
Bra030872.1-P	Field mustard	cytosol	17.41	18.85
Bra037989.1-P	Field mustard	cytosol, plastid	16.99	18.39
Bra026073.1-P	Field mustard	cytosol	8.07	18.36
Bra032358.1-P	Field mustard	mitochondrion, plastid	15.29	18.09
Bra003447.1-P	Field mustard	cytosol	13.59	17.83
Bra037535.1-P	Field mustard	cytosol	12.53	17.0
Bra032983.1-P	Field mustard	cytosol	14.44	16.55
Bra001739.1-P	Field mustard	cytosol	12.1	16.47
Bra008155.1-P	Field mustard	cytosol	10.19	16.16
Bra016297.1-P	Field mustard	cytosol	14.01	15.49
Bra002471.1-P	Field mustard	cytosol	12.31	15.47
Bra025251.1-P	Field mustard	cytosol	13.8	15.01
Bra012304.1-P	Field mustard	cytosol	14.86	14.99
Bra003796.1-P	Field mustard	cytosol	13.59	14.99
Bra026838.1-P	Field mustard	nucleus	12.95	14.99
Bra026575.1-P	Field mustard	nucleus	13.8	14.64
Bra017407.1-P	Field mustard	nucleus, plastid	13.38	14.35
Bra015905.1-P	Field mustard	cytosol	12.53	14.32
Bra032052.1-P	Field mustard	cytosol	5.31	14.2
Bra007843.1-P	Field mustard	cytosol	11.04	13.98
Bra024801.1-P	Field mustard	nucleus	13.16	13.69
Bra010784.1-P	Field mustard	cytosol	11.25	13.35
Bra005497.1-P	Field mustard	cytosol	4.03	13.19
Bra031360.1-P	Field mustard	plastid	6.58	12.7
Bra034944.1-P	Field mustard	cytosol	10.83	12.47

Protein Annotations

MapMan:17.1.2.1.17	Gene3D:2.120.10.80	Gene3D:3.90.470.10	EnsemblPlantsGene:Bra030045	EnsemblPlants:Bra030045.1	EnsemblPlants:Bra030045.1-P
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529
InterPro:IPR015915	InterPro:IPR036394	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:Kelch_2	UniProt:M4EMM5
PFAM:PF00237	PFAM:PF01344	PFAM:PF07646	ScanProsite:PS00464	PANTHER:PTHR11593	PANTHER:PTHR11593:SF17
InterPro:Ribosomal_L22	InterPro:Ribosomal_L22/L17_CS	InterPro:Ribosomal_L22/L17_euk/arc	InterPro:Ribosomal_L22/L17_sf	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF54843	TIGRFAMs:TIGR01038	UniParc:UPI00025411B0	SEG:seg	:	:

Description

AT1G27420 (E=4e-127) | kelch repeat-containing F-box family protein

Coordinates

chrA07:-:6983416..6986391

Molecular Weight (calculated)

53431.9 Da

IEP (calculated)

9.536

GRAVY (calculated)

-0.396

Length

471 amino acids

Sequence
(BLAST)

001: MVKYSQEPDN STKSCKARGA DLRVHFKNTR ETAHAIRKLP LLKAKRYLED VIAHKQAIPF TRFCRGVGRT SQAKNRHSNS QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EVCRRWKTLL RSEHFAAVRK LTGTVEEFMC VLMETVPGKK
201: VYWEVFDSSG NKLGQIPNVP GPLKWGYGVT VLGGEKILFI GGYTGIGGCV TNRNTPLASA DVYEFDPATN SWGKLPDMNI PRYNFALAEV DGLLYVVRGY
301: TNDGYCLLNS DVYNPETNQW TLMDCPQFRN ISGFAFSFKS KLYALGNGSC TVDIYDPKTK TWEELELEKS MSVYSYTVVR NKVYFLDKDL TGRLGVFDPE
401: ENSWTTVFVP TVAGGFRFGV GQWNNKVLLF SRLSVHETII NDFDKEKGSK WRYCSQIKPS GSHLFSVLIN F

Best Arabidopsis Sequence Match ( AT1G27420.1 )
(BLAST)

001: MVVESSSSPI IPGLTDDVAE LCVSKIPRSS FQITSQVCRR WRSFLRSQHF AAVRKLTGTV EEFLCVLMES ECGRDVYWEV FDASGNKLGQ IPPVPGPLKR
101: GFGVAVLDGG KIVFFGGYTE VEGSGINSTT VSASADVYEF DPANNSWRKL AGMNIPRYNF AFAEVNGLLY VIRGYSTDTY SLSNAEVYNP KTNQWSLMHC
201: PNRPVWRGFA FAFSSKLYAV GNGSRFIDIY DPKTQTWEEL NSEQSVSVYS YTVVRNKVYF MDRNMPGRLG VFDPEENSWS SVFVPPREGG FWVRLGVWNN
301: KVLLFSRVCG HETLMYDLDK EKGSKWRVCD QIKPSASQLA SVLINF

Arabidopsis Description

Putative F-box/kelch-repeat protein At1g27420 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZJ3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.