Factsheet for Solyc01g005970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081852	Potato	cytosol	98.86	98.86
VIT_06s0004g00860.t01	Wine grape	cytosol	90.16	90.16
Solyc01g022740.2.1	Tomato	cytosol	88.56	88.56
KRH42810	Soybean	cytosol	83.75	83.75
KRH58897	Soybean	cytosol	83.07	83.07
AT1G55270.1	Thale cress	mitochondrion	79.63	80.18
Bra011908.1-P	Field mustard	mitochondrion	79.41	79.77
CDY26117	Canola	cytosol	79.41	79.77
CDY08233	Canola	mitochondrion	78.95	79.31
CDY02451	Canola	cytosol	78.72	79.08
Bra030872.1-P	Field mustard	cytosol	78.49	78.85
CDY10574	Canola	cytosol	78.49	78.85
GSMUA_Achr7P27010_001	Banana	cytosol	70.48	74.04
CDY33062	Canola	mitochondrion, plastid	73.46	73.79
GSMUA_Achr3P29560_001	Banana	cytosol	69.11	73.48
CDY24045	Canola	mitochondrion	73.0	73.33
Bra037989.1-P	Field mustard	cytosol, plastid	72.54	72.87
EER91632	Sorghum	plastid	72.08	72.08
Os10t0409900-01	Rice	plastid	72.54	71.72
TraesCS1B01G154600.1	Wheat	plastid	71.62	71.46
Zm00001d032991_P001	Maize	cytosol	71.4	71.4
TraesCS4D01G282200.1	Wheat	cytosol	66.36	69.54
Os03t0167800-02	Rice	cytosol	69.57	69.41
KRH11716	Soybean	cytosol, golgi, plastid	58.81	69.09
TraesCS4A01G020200.1	Wheat	cytosol	67.51	68.6
TraesCS3D01G540000.1	Wheat	cytosol	66.36	67.92
TraesCS3B01G611700.1	Wheat	cytosol	66.36	67.92
TraesCS4B01G283400.1	Wheat	cytosol	66.82	67.91
EER95442	Sorghum	mitochondrion	67.51	67.35
TraesCS4B01G283500.1	Wheat	cytosol	66.13	67.05
HORVU4Hr1G074720.7	Barley	plasma membrane	67.28	66.97
TraesCS1D01G136700.1	Wheat	nucleus	71.17	66.6
TraesCS3A01G534600.1	Wheat	cytosol	65.22	66.13
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	66.36	66.06
HORVU1Hr1G035200.1	Barley	plasma membrane	70.71	65.05
KRH36711	Soybean	cytosol	56.75	61.54
HORVU3Hr1G116690.2	Barley	mitochondrion	66.36	59.55
GSMUA_Achr4P03630_001	Banana	plasma membrane	62.24	32.04
Solyc02g021600.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	25.86	28.11
Solyc07g042960.1.1	Tomato	cytosol, mitochondrion	10.53	26.14
Solyc06g008690.1.1	Tomato	cytosol	19.91	25.22
Solyc01g104980.2.1	Tomato	cytosol, plastid	27.0	24.84
Solyc09g065400.1.1	Tomato	cytosol	19.45	24.64
Solyc01g094520.2.1	Tomato	nucleus	22.43	24.56
Solyc11g069320.1.1	Tomato	plastid	10.76	21.56
Solyc04g005670.1.1	Tomato	cytosol	19.45	21.04
Solyc03g113010.1.1	Tomato	cytosol	18.54	18.37
Solyc07g042950.1.1	Tomato	cytosol	6.86	16.85
Solyc04g005870.1.1	Tomato	cytosol	1.83	15.09
Solyc05g007220.2.1	Tomato	nucleus	19.91	13.51
Solyc07g009410.2.1	Tomato	cytosol	13.5	13.23

Protein Annotations

Gene3D:2.120.10.80	MapMan:9.2.1.1.3	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031463	InterPro:IPR001810	InterPro:IPR015915	UniProt:K4ASG3	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24412	PANTHER:PTHR24412:SF234	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc01g005970.2	EnsemblPlants:Solyc01g005970.2.1	UniParc:UPI0002761EBC	:

Description

No Description!

Coordinates

chr1:+:642518..647246

Molecular Weight (calculated)

49285.4 Da

IEP (calculated)

9.799

GRAVY (calculated)

-0.292

Length

437 amino acids

Sequence
(BLAST)

001: MDQTIERSPN AQRGFRVQAP LVDSVSCYCK VDSGFKTVVG ARKFVSGSKI CIQPDINPHA HKTKNSRRER SRVQSPLLPG LPDDLAIACL IRVPRVEHNK
101: LRLVCKRWYR LLAGNFFYSL RKSLGMAEEW VYVIKRDRDG RISWHAFDPT YQLWQPLPPL PGEYSEALGF GCAVLSGCHL YLFGGKDPIK GSMRRVIFYS
201: ARTNKWHRAP DMLRKRHFFG SCVINNCLYV AGGECEGIQR TLRSAEVYDP NRNRWTFVAD MSTAMVPFIG VIYDGKWFLK GLGSHREVLS EAYNPETNGW
301: SPVTDGMVAG WRNPSISMNG RLYALDCRDG CKLRVYDGAS DSWNRFIDSK LHLGSSRALE AAALVPLNGK LCIIRNNMSI SMVDVSSPDK QVETNPHLWE
401: NIAGKGHFRT LFTNLWSSIA GRGGLKSHIV HCQVLQA

Best Arabidopsis Sequence Match ( AT1G55270.1 )
(BLAST)

001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA

Arabidopsis Description

F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.