Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31534 | Canola | cytosol | 88.04 | 92.27 |
| Bra002471.1-P | Field mustard | cytosol | 88.04 | 92.27 |
| CDX80156 | Canola | cytosol | 88.3 | 91.56 |
| Solyc11g069320.1.1 | Tomato | plastid | 42.24 | 76.15 |
| VIT_06s0004g02980.t01 | Wine grape | cytosol | 66.92 | 72.25 |
| KRH26429 | Soybean | cytosol | 66.41 | 71.7 |
| KRH29930 | Soybean | cytosol | 59.03 | 66.86 |
| KRH22905 | Soybean | cytosol | 65.9 | 66.58 |
| PGSC0003DMT400020936 | Potato | cytosol | 65.65 | 66.49 |
| KRH24879 | Soybean | cytosol | 66.67 | 66.0 |
| KXG27134 | Sorghum | cytosol | 43.26 | 63.2 |
| KRH12864 | Soybean | cytosol, plasma membrane | 51.4 | 62.15 |
| GSMUA_Achr3P23350_001 | Banana | cytosol, extracellular | 51.15 | 49.88 |
| TraesCS2D01G463000.1 | Wheat | cytosol | 55.22 | 48.55 |
| TraesCS2A01G462600.1 | Wheat | cytosol | 54.96 | 48.11 |
| TraesCS2B01G484200.1 | Wheat | cytosol | 54.71 | 47.88 |
| HORVU2Hr1G103880.2 | Barley | cytosol | 53.94 | 47.53 |
| Zm00001d026321_P001 | Maize | cytosol | 53.94 | 47.32 |
| GSMUA_Achr9P30470_001 | Banana | cytosol | 46.82 | 47.06 |
| Os04t0619300-01 | Rice | cytosol, extracellular | 55.73 | 46.01 |
| OQU82347 | Sorghum | mitochondrion | 54.96 | 45.76 |
| Zm00001d002284_P003 | Maize | mitochondrion | 55.22 | 44.47 |
| GSMUA_Achr11P... | Banana | cytosol | 45.29 | 40.45 |
| Zm00001d007538_P001 | Maize | cytosol | 29.77 | 39.39 |
| AT1G26930.1 | Thale cress | cytosol | 41.98 | 39.19 |
| AT1G14330.1 | Thale cress | nucleus | 42.49 | 37.87 |
| AT1G74510.2 | Thale cress | cytosol | 40.2 | 35.03 |
| AT2G02870.1 | Thale cress | nucleus | 41.48 | 34.9 |
| Zm00001d019862_P001 | Maize | cytosol | 53.18 | 30.56 |
| AT3G27150.1 | Thale cress | cytosol | 32.32 | 30.09 |
| AT5G40680.1 | Thale cress | mitochondrion | 29.01 | 27.47 |
| AT3G63220.2 | Thale cress | cytosol | 20.1 | 22.44 |
| AT1G30090.1 | Thale cress | mitochondrion, plastid | 20.87 | 20.6 |
| AT1G67480.1 | Thale cress | cytosol, mitochondrion | 19.59 | 20.48 |
| AT1G16250.2 | Thale cress | cytosol | 19.59 | 20.1 |
| AT1G27420.1 | Thale cress | cytosol, plastid | 17.3 | 19.65 |
| AT3G61350.2 | Thale cress | cytosol | 17.3 | 18.99 |
| AT1G55270.1 | Thale cress | mitochondrion | 20.1 | 18.2 |
| AT1G22040.1 | Thale cress | plastid | 21.12 | 17.47 |
| AT2G24540.1 | Thale cress | cytosol | 16.54 | 17.47 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:836178 | UniProt:A0A178UDZ8 | ProteinID:AED97346.1 | EMBL:AK221729 |
| ProteinID:ANM69864.1 | ProteinID:ANM69865.1 | ArrayExpress:AT5G60570 | EnsemblPlantsGene:AT5G60570 | RefSeq:AT5G60570 | TAIR:AT5G60570 |
| RefSeq:AT5G60570-TAIR-G | EnsemblPlants:AT5G60570.2 | Unigene:At.43004 | ProteinID:BAB08240.1 | EMBL:BT029765 | InterPro:F-box-like_dom_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019005 | GO:GO:0019538 | GO:GO:0030162 | GO:GO:0031625 | GO:GO:0042787 |
| GO:GO:0043161 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_001331512.1 | RefSeq:NP_001331513.1 |
| RefSeq:NP_200865.1 | ProteinID:OAO92106.1 | PFAM:PF01344 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF169 | UniProt:Q9FKJ0 |
| SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI000009DDFE | SEG:seg | : |
Description
F-box/kelch-repeat protein At5g60570 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKJ0]
Coordinates
chr5:+:24347783..24350164
Molecular Weight (calculated)
43715.8 Da
IEP (calculated)
7.931
GRAVY (calculated)
-0.147
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEEHSNKR REVSASASAS ASASVVVNLR VGEEDNDGHR LRLGSSDSVL PGLIDDVALN CLAWVPRSDY PSLSCVNKKY NKLINSGHLF ALRKELGIVE
101: YLVFMVCDPR GWLMFSPMKK KWMVLPKMPC DECFNHADKE SLAVDDELLV FGRELFQFAI WKYSLRSRCW VKCEGMHRPR CLFASGSLGG IAIVAGGTDM
201: NGNILASAEL YDSSSGRWEM LPNMHSPRRL CSGFFMDGKF YVIGGMSSPN VSVTFGEEFD LETRKWRKIE GMYPNVNRAA QAPPLVVVVN NELFTLEYST
301: NMVKKYDKVK NKWEVMGRLP PMVDSSNGWG LAFKPCGDQL LVFCGQRGPH GEGIVVNSWC PKSGAKDGNL DWKVLGVKEN VGVFVYNCAV MGC
101: YLVFMVCDPR GWLMFSPMKK KWMVLPKMPC DECFNHADKE SLAVDDELLV FGRELFQFAI WKYSLRSRCW VKCEGMHRPR CLFASGSLGG IAIVAGGTDM
201: NGNILASAEL YDSSSGRWEM LPNMHSPRRL CSGFFMDGKF YVIGGMSSPN VSVTFGEEFD LETRKWRKIE GMYPNVNRAA QAPPLVVVVN NELFTLEYST
301: NMVKKYDKVK NKWEVMGRLP PMVDSSNGWG LAFKPCGDQL LVFCGQRGPH GEGIVVNSWC PKSGAKDGNL DWKVLGVKEN VGVFVYNCAV MGC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.