Factsheet for AT1G16250.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81755	Canola	cytosol	88.77	87.18
CDX96822	Canola	extracellular, vacuole	91.91	81.48
CDY33348	Canola	cytosol	32.38	68.89
CDY17172	Canola	cytosol	25.07	66.67
Bra005497.1-P	Field mustard	cytosol	25.07	66.67
CDY35075	Canola	cytosol	31.59	65.76
Bra026073.1-P	Field mustard	cytosol	35.51	65.7
CDY35074	Canola	cytosol	35.77	65.55
Solyc07g042950.1.1	Tomato	cytosol	28.2	60.67
Solyc07g042960.1.1	Tomato	cytosol, mitochondrion	26.63	57.95
GSMUA_Achr2P18470_001	Banana	cytosol	45.17	40.61
AT3G63220.2	Thale cress	cytosol	26.37	28.69
AT1G67480.1	Thale cress	cytosol, mitochondrion	20.89	21.28
AT1G55270.1	Thale cress	mitochondrion	23.24	20.51
AT1G22040.1	Thale cress	plastid	25.33	20.42
AT1G27420.1	Thale cress	cytosol, plastid	17.75	19.65
AT5G60570.2	Thale cress	cytosol	20.1	19.59
AT1G30090.1	Thale cress	mitochondrion, plastid	19.58	18.84
AT2G24540.1	Thale cress	cytosol	18.28	18.82
AT3G61350.2	Thale cress	cytosol	17.23	18.44
AT1G26930.1	Thale cress	cytosol	20.1	18.29
AT3G27150.1	Thale cress	cytosol	19.06	17.3
AT1G74510.2	Thale cress	cytosol	20.37	17.29
AT5G40680.1	Thale cress	mitochondrion	18.54	17.11
AT1G14330.1	Thale cress	nucleus	19.58	17.01
AT2G02870.1	Thale cress	nucleus	19.58	16.06

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:838194	ProteinID:AAD34677.1	ProteinID:AEE29426.1	EMBL:AK226518
ProteinID:ANM59214.1	ArrayExpress:AT1G16250	EnsemblPlantsGene:AT1G16250	RefSeq:AT1G16250	TAIR:AT1G16250	RefSeq:AT1G16250-TAIR-G
EnsemblPlants:AT1G16250.2	Unigene:At.41893	EMBL:BT029548	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	RefSeq:NP_001321591.1
RefSeq:NP_173075.3	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF41	UniProt:Q0WW40
SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI000034F393	:	:	:

Description

F-box/kelch-repeat protein At1g16250 [Source:UniProtKB/Swiss-Prot;Acc:Q0WW40]

Coordinates

chr1:+:5556964..5559520

Molecular Weight (calculated)

43068.3 Da

IEP (calculated)

7.203

GRAVY (calculated)

-0.286

Length

383 amino acids

Sequence
(BLAST)

001: MESIEQSIIP GLPDDLALRC IAKLSHGYHG VLECVSRGWR DLVRGADYSC YKARNGWSGS WLFVLTERSK NQWVAYDPEA DRWHPLPRTR AVQDGWHHSG
101: FACVCVSNCL LVIGGCYAPS VSSFPHQKPV VTKDVMRFDP FKKQWKMVAS MRTPRTHFAC TSVSGKVYVA GGRNLTHSRG IPSAEVYDPV ADRWEELPAM
201: PRPQMDCSGL SYRGCFHVLS DQVGFAEQNS SEVFNPRDMT WSTVEDVWPF SRAMQFAVQV MKNDRVYTIV DWGESLIKTR DTDEGEWYNV GSVPSVVLPN
301: HPRELEAFGY GFAALRNELY VIGGKVLKWE ESGAGRFDIV RLPVVRVCNP LDRPLNWRET KPMCIPAGGS IIGCVSLEES SPP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.