Factsheet for GSMUA_Achr3P23350_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P30470_001	Banana	cytosol	72.7	74.94
KXG27134	Sorghum	cytosol	49.88	74.72
GSMUA_Achr11P...	Banana	cytosol	76.43	70.0
VIT_16s0039g01470.t01	Wine grape	cytosol	65.26	68.49
TraesCS2A01G462600.1	Wheat	cytosol	70.22	63.03
TraesCS2D01G463000.1	Wheat	cytosol	69.48	62.64
Zm00001d026321_P001	Maize	cytosol	69.48	62.5
TraesCS2B01G484200.1	Wheat	cytosol	69.23	62.14
HORVU2Hr1G103880.2	Barley	cytosol	68.73	62.11
Solyc11g069320.1.1	Tomato	plastid	33.5	61.93
OQU82347	Sorghum	mitochondrion	70.97	60.59
Os04t0619300-01	Rice	cytosol, extracellular	70.72	59.87
Zm00001d002284_P003	Maize	mitochondrion	70.47	58.2
KRH26429	Soybean	cytosol	52.11	57.69
PGSC0003DMT400020936	Potato	cytosol	53.35	55.41
KRH22905	Soybean	cytosol	53.35	55.27
KRH29930	Soybean	cytosol	47.39	55.04
KRH24879	Soybean	cytosol	52.85	53.65
AT5G60570.2	Thale cress	cytosol	49.88	51.15
Bra002471.1-P	Field mustard	cytosol	47.39	50.93
CDY31534	Canola	cytosol	47.39	50.93
CDX80156	Canola	cytosol	47.89	50.92
KRH12864	Soybean	cytosol, plasma membrane	39.7	49.23
Zm00001d007538_P001	Maize	cytosol	35.98	48.82
GSMUA_Achr7P20970_001	Banana	cytosol	45.66	46.58
GSMUA_Achr4P00520_001	Banana	cytosol	43.92	45.5
GSMUA_Achr4P09990_001	Banana	cytosol	47.64	44.76
GSMUA_Achr8P01380_001	Banana	cytosol	42.18	44.74
GSMUA_Achr1P21630_001	Banana	cytosol	40.69	43.5
GSMUA_Achr10P...	Banana	nucleus	44.42	41.15
GSMUA_Achr8P17960_001	Banana	nucleus	41.44	40.14
Zm00001d019862_P001	Maize	cytosol	65.76	38.74
GSMUA_Achr2P14920_001	Banana	mitochondrion	42.68	35.98
GSMUA_Achr3P01570_001	Banana	golgi	42.18	34.76
GSMUA_Achr4P24130_001	Banana	nucleus	42.93	33.46
GSMUA_Achr6P24370_001	Banana	cytosol	17.62	20.46
GSMUA_Achr8P28270_001	Banana	cytosol	17.87	18.75
GSMUA_Achr6P04050_001	Banana	cytosol	21.09	18.68
GSMUA_Achr7P27010_001	Banana	cytosol	18.86	18.27
GSMUA_Achr3P16120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	16.63	17.54
GSMUA_Achr3P29560_001	Banana	cytosol	17.87	17.52
GSMUA_AchrUn_...	Banana	cytosol	15.14	17.09
GSMUA_Achr7P08330_001	Banana	cytosol	16.63	17.01
GSMUA_Achr4P20790_001	Banana	extracellular	15.88	16.98
GSMUA_Achr6P20750_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	16.13	16.67
GSMUA_Achr6P31190_001	Banana	mitochondrion	16.38	16.06
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	16.13	15.93
GSMUA_Achr2P18470_001	Banana	cytosol	16.63	15.73
GSMUA_Achr2P22090_001	Banana	cytosol	14.64	15.65
GSMUA_Achr10P...	Banana	cytosol	19.85	15.38
GSMUA_Achr4P03630_001	Banana	plasma membrane	17.62	8.36

Protein Annotations

EnsemblPlants:GSMUA_Achr3P23350_001	EnsemblPlants:GSMUA_Achr3T23350_001	EnsemblPlantsGene:GSMUA_Achr3G23350_001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF150
PFAM:PF01344	SEG:seg	SUPFAM:SSF117281	UniParc:UPI000295BF22	UniProt:M0SH51	MapMan:35.1

Description

F-box/kelch-repeat protein At5g60570 [Source:GMGC_GENE;Acc:GSMUA_Achr3G23350_001]

Coordinates

chr3:-:24207373..24208872

Molecular Weight (calculated)

45315.5 Da

IEP (calculated)

8.084

GRAVY (calculated)

-0.158

Length

403 amino acids

Sequence
(BLAST)

001: MVAVPSCYLL QLFGSLDEDC GSFQKYLLAY LLLAKNGNIL EEVKRDIFDR DVNVQSLNLT GLNLRSVVKA RPGGGYTDQR SNYHLFPGLY DDITLDCLAL
101: TCRSDYPSLA CLNRKFNSLI RSGYLYKLRR QHGVIEHWVY LACSLMPWEA YDPFRRRWMR LPRMPCDDCF SCADKESLAV GTQLLVFGRE VTGFAIWMYS
201: LVRRDWSRCP PMNLPRCLFG SGSSGDIAIV AGGNMNVPRR LCSGFFMDGK FYVIGGMSSH TDSLTCGEEY NLETRAWRRI WNMYPGGNRA TQSPPLVAVV
301: NNQLYAADQS TNEVKKYDKA NNIWNVVRTL PVRADSSNGW GLAFKPCGDK LLVIGGHRGP QGEVIVLHYW CPEDGNVGGA DWDVLSIKER AGAFVYNCAI
401: MGC

Best Arabidopsis Sequence Match ( AT5G60570.2 )
(BLAST)

001: MAAEEHSNKR REVSASASAS ASASVVVNLR VGEEDNDGHR LRLGSSDSVL PGLIDDVALN CLAWVPRSDY PSLSCVNKKY NKLINSGHLF ALRKELGIVE
101: YLVFMVCDPR GWLMFSPMKK KWMVLPKMPC DECFNHADKE SLAVDDELLV FGRELFQFAI WKYSLRSRCW VKCEGMHRPR CLFASGSLGG IAIVAGGTDM
201: NGNILASAEL YDSSSGRWEM LPNMHSPRRL CSGFFMDGKF YVIGGMSSPN VSVTFGEEFD LETRKWRKIE GMYPNVNRAA QAPPLVVVVN NELFTLEYST
301: NMVKKYDKVK NKWEVMGRLP PMVDSSNGWG LAFKPCGDQL LVFCGQRGPH GEGIVVNSWC PKSGAKDGNL DWKVLGVKEN VGVFVYNCAV MGC

Arabidopsis Description

F-box/kelch-repeat protein At5g60570 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.